RNA id: AMCG00021278


Basic Information

Item Value
RNA id AMCG00021278
length 2418
RNA type mRNA
GC content 0.52
exon number 14
gene id AMCG00021278
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13612442 ~ 13622612 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGCGAAGCGGAAGTCGTGGTTGTTGCGGAAAGTGTCGCTTTCCGTGGAGCTGAAGATGGCGAGTGtagtggctgctgctgctgcggcgGGGAGAGATCCTGCTGTAGACCGGTCTCTGCGCTCCGTCTTCGTTGGAAATATCCCCTACGAAGCCACAGAGGAGCAGCTGAAGGACATTTTCTCGGAAGTGGGGCTGGTCGTCAGCTTCAGGTTGGTCTATGACAGGGAAACCGGGAAGCCCAAAGGCTATGGCTTCTGTGAATACCAGGACCAGGAGACGGCCCTCAGTGCCATGCGCAACCTGAATGGGCGGGAGTTCAGTGGTCGAGCCCTACGCGTGGACAATGCAGCCAGCGAAAAGAATAAAGAGGAGCTCAAGAGTTTGGGTACGGGTGCCCCGGTGATTGAGTCTCCCTATGGAGATCCTTGCCAGCCTGAAGAAGCTCCTGAGTCCATCAGCCGAGCAGTGGCTAGTCTGCCTCCTGAGCAGATGTTTGAGCTcatgaaacaaatgaaaCTGTGTGTTCAGAATAGCCCTCAAGAGGCACGAAACATGCTCCTACAGAACCCCCAGTTGGCCTACGCTTTGCTACAGGCCCAGGTGGTTATGAGGATCGTTGACCCAGAAATCGCACTGAAAATGCTTCACCGGCAAACAACGGTCCAGCCCCTGATCCCCGGCAATCAGGCAGCCTCTGGACCCATCTCTAATCAACCTCTGTCCCAGGCCAACATCCCAGTGTCCCAGCCACAACCCATGGCTGGCATGCATGTGAATGGAGCTCCTCAGATGATGCAGGGTCCTCAGATGGTGTCTGGAGTGACAGGACAAGTCCCTGGGCAAGGCCCTGTGGGCCCTGCAGGTGGGATCCAGCCTCAGATTGTCATTCCCCAGGGGGGACCTGTACCTATGGACAGGGGGCAAGTGCCCATGACAGATCCACGGGCACCCATGCGGGGGAGTGTGCCCTCCGTTGCCGCCGTGGTGGCACCTCGTGGCCTCCTGGGTGACGGCCCTAATGACCCCCGTGGCGGAACGCTACATTCTGTCACGGGAGAGGTGATTGAACCAAGccGGGGGTTCATGGGAGCACCACCACACCAGGGTCCACCAATGCACATGACCCACGATGGTCGAGGACCCCCTTCAGATATTCGTGGGCCTCATGACATGAGGGGAGGGCCCTTGGGAGAGCCCAGAGGCATGATGGGAGAACCTAGAGGACCCATGATGGATCAGAGAGGAGGACCAATGGAAACCAGAGGAGGCCGTGACCCCAGAGCAGTGGAAACCCGCAGTCTGGATGCAAGGGGCCCTGTACCAGCCCAGAGAATTCCCATGGCAACAGGAATCCAGGGCCCAGGGCCACACACCATGGGAGCCAGCGTGCCCCAGCCCACAAGACAGCAGGCGCCTGGTCTCCCAGGGGTTCCCCAAACAGGAGGCTTCAGCCCGGCCCAGAGCCAGGTCACCTCACAGGACCACGAGAAGgcTGCCCTGATCATGCAGGTGCTCCAGCTGACCCCCGAGCAGATCGCCATGCTGCCGCTTGAGCAGAGGCAGAGCATCCTCATCCTGAAGGAGCAGATACAGAAGACGGCCGGGGCCCCCTGAGAGACTGCGGCCCACAGAGGGGAAGCTGAGAGaaccTCCATATCAGCTTCAGTAACACCTTCAGCATCTGTGATCCAGACAACAGCTTGCCTAATCATCGGAGACCGACGTTTAAGTTCATATTTGTGATAAaagttgttgttgtattttgttattgataTTTTGGAATCTTTTCCCAGGAGGGATGCATAAGTTGGTGTCAGTCTGAGGTTGAGCTGTTACTGTACATTAGAGGGGAAGAATTACTTGCAAACTGTTGGTCTGTGAGAGGATTATTGGAGTACAGAGTAAGGGATGTGTGCCCAAAATCTCAATGGCATATTCTTAAAAAAGTTTTACCTTTTAATTCCTTTAGCTGTGGAATGTATTAATCCAAAAACTATTCAAAATGTTATGCTATAAGACTGAACAAAGACTCTTTCTTGCGGAGTACAGACTTATGCGTGGCAgatttttcaaatgtctttttgGAAAAGACATTGTCATTCTAACATTGAATAGCCATGGGTCATGTCACTCAAGAGGTGTGAGGCTAATTTACAGTGACCTTAGATATTAATTTGGTGGAAGTGCTGCTCTGATTTGCCATATTTGTGTTTCGAAGGACAAGACTCTGTAATCTAATCCACTTTAAATACTCCCCTTAAAGAATGACAGGGCAAAGTAAATAGTTCTGCGAAGCCCAGTGAGAACTGACAGCTGACTCTTTAAAGACTGAAAGTTGTGCCCTGTTTTCTGATATTTGtactctgtatttgttttcagcaattctttcaataaaataaagttttcaaAAGATG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14407 CSTF2, RNA15; cleavage stimulation factor subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105813 lncRNA downstream 949123 12663009 ~ 12663319 (-) True G84822
TU105803 lncRNA downstream 1108940 12500240 ~ 12503502 (-) True G84812
TU105774 lncRNA downstream 1409615 12198777 ~ 12202827 (-) True G84785
TU105763 lncRNA downstream 1469079 12141960 ~ 12143363 (-) True G84780
TU105760 lncRNA downstream 1479285 12131302 ~ 12133157 (-) True G84778
TU106048 lncRNA upstream 128594 13751206 ~ 13755469 (-) True G85003
TU106057 lncRNA upstream 213975 13836587 ~ 13837073 (-) True G85009
TU106060 lncRNA upstream 235692 13858304 ~ 13862544 (-) True G85012
TU106061 lncRNA upstream 235692 13858304 ~ 13862472 (-) False G85012
TU106062 lncRNA upstream 237676 13860288 ~ 13862472 (-) False G85012
AMCG00021271 mRNA downstream 31790 13575748 ~ 13580652 (-) True AMCG00021271
AMCG00021273 mRNA downstream 44614 13566358 ~ 13567828 (-) True AMCG00021273
AMCG00021269 mRNA downstream 51029 13557156 ~ 13561413 (-) True AMCG00021269
AMCG00021272 mRNA downstream 56745 13545630 ~ 13555697 (-) True AMCG00021272
AMCG00021270 mRNA downstream 123701 13455243 ~ 13488741 (-) True AMCG00021270
AMCG00021289 mRNA upstream 55170 13677782 ~ 13679075 (-) True AMCG00021289
AMCG00021286 mRNA upstream 58291 13680903 ~ 13691172 (-) True AMCG00021286
AMCG00021291 mRNA upstream 83249 13705861 ~ 13713994 (-) True AMCG00021291
AMCG00021287 mRNA upstream 95361 13717973 ~ 13724648 (-) True AMCG00021287
AMCG00021285 mRNA upstream 133083 13755695 ~ 13771411 (-) True AMCG00021285
TU105842 other downstream 810856 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1084748 12527093 ~ 12527694 (-) True G84814
TU104623 other downstream 7065865 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 8861207 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 10930680 2681560 ~ 2681762 (-) False AMCG00021090
TU105989 other upstream 4723 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 247327 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 427362 14049974 ~ 14051897 (-) True G85115
TU106928 other upstream 2618392 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 3024527 16647139 ~ 16649825 (-) False AMCG00021412

Expression Profile