RNA id: AMCG00021285


Basic Information

Item Value
RNA id AMCG00021285
length 4206
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00021285
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13755695 ~ 13771411 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACTGGGTATCATTATAGCAGAAGTCCAAGATCATTTTTGATGTGGTTTCCTGCACCTCCCTTCCTAACCCCTTTGCACAATAGCATCTCTAATATGGCTTTGAGgagatttgaaatgttttatcagTCATCCTTCCTGACCTCTGAACCCTGTTGATGGTCAAATCCAGACTGTATGCTCCCACAGCCCGCTTATCCTGAAGACCAACAGCTGTGCCCACTCTTGTGAATTATAATGCTCCTCTGCAGCAAATGAATTTGCTTTTGGTGGCTGCAGATTCACACACCTGCTCAGCATCAGTTGTAAGTTTCTAAATTTGTCAGGTCTTTCACTTTCAACACAAATTCTACAAAGAAAGTTTGGTGCATGTTCAATGCTCGTGACTGTTCGCCTGATATCTTACATTTTCCTAAATCAAAATTACAACCCTGCTctgttgacttttttttgttaaccaATAATAATCTATATATCTGCACATCagtaaactaaattaatctaCTTTTCGTGTCTTCGTTGTTGCATTgttgtcaatgtttttaattcacataTAACCATTTCTTCTTCCTTTCGAGCTGTGAGTTTCCTGAGCTAGAGAAGCAAAGACTAACCACAGTGTAAACTACCACAGAAAGCTGAAGTCAAGAACTGTATAAATAGCTTgaacaagaaatacaatttagACAGGAAAAGGTTAGAAGTATAGAATATTTGTATATCTAAGAATATTTGGTGTGTCAAACATCACTATccctcaaaataaatacaatcaagtAAATATTGACTCCAGCataaatagagaaaaaaatattttcacccagttaaaggttttgtttttaatcgtTGTGCAGATGTAGTTATTACATTTAGCCGGAACCCTCAACCctagcaaacaaaaaagtgccAATAAGTTGAAGCATGAGactgtcatgtttttttctcctcatttATGAAAGCCCTGCGGAAGGATTATGTGATGGTCTTTCGCCTCTGTGTAAGAAGGTAGTCAAGCTGGACATGTGATGATTCAGTCTCTAGATTTCAGGCCTGTTTTGCAACGTGTAAAAATAGACCAATTGAGCAACACCTCTTCATAGCACGTACGTATGCTTCTTTATTTGGGGTTAGGAAATTAAGTCGTCTTTCTTTTAATCTAGAAACGTACAAACAGATCGTACTTGCACATTGTAATACCATGATCTGTGACTAAGGTTATTAGATCCGATGGCTGCACCAATATTCTGTTATATTtctattgcattgttttaaccATACTCATTTTTTGTCAGTCCCTGTGGAGGTAGATTAATGGCTTATAAAACTTgaatctttaaataattatatctgCACACACATGATGGTACCCAAAATTATTAAGTAGGAGCTAGAACTTCTTTTTCAAGTCTACACACATCCATCTATCTTTGAGAACTGCAgagtttacattgtttttagtaCCTATGACAGGATATTCACTGGAAATCAAAAATGTTGTCAGAACACCACTAGATGTATTGGACTGTGAGCAACTTCATTAGTCGGCTTGAAGGGGATTGTTGGTTTAACAGAACACAATGCACACCCCCACCATCCCCCACCATCCCCAGTCTTTGAGCCAATATTATATTGAAGTCTTCAGGCTTTTCAGCTGAGAAACAGAGATGTACAAGCTTCCTGTTTTACTGAACACTAAAAGCGCTTGATGTCGAAGTTCCTATATGGTCATGTGACTTCCTCTAACTCACTGTCTTCTACTCCACCGTGCTTGcatctgtgtgcgtgtgtgtgttttctttctctaaCCATTTCAACAGGATATCGGGGAGGTAGAGACACAGTTGTGGGAGAGACCAACGGTGTTCTGCGCGCTTTCATATATTTGTCCTGCTTATGTAAGATGTTACGACGGAAACCTTCCAATGCCTCGGAGAAGGAACAGGTGCAGAAAAAGAAGCTCTCTCTCCAGAGGTCCAGCAGCTTCAAGGACTTCATGAAGTCCAAGCCTTCATCCCCTGTGGTGGCAGACAAGGAGTTTCGCCTGGAGGATACTTTGCCGGAGGATGGTCACATCCctgaggagggagggaagagcgGCGGGAAACTGGGCAAGAAGTGGAGGGCTGTCATCTCACGAACCATGACCAGGAAGACTTCAAAAATGGTGCAGAAAGCGCTGGCTGAGGAAGGGGTGGATAGTGGGGAGGAGAACTCCATGTCTCCCATGTCTTTCGACGGTGTGCCAGAACTGCGGATGAGCGAACGAATGTCCCAGTGCTCCTTCGACTCCGAGGACGCCGTACACAGCCCCATCGCTCGCCAGCTCTCCGGGTGTGGTGACCGGAACAGCCTGGATAGCGGCTACAGTAACAGAGACAGTATGAGACTGGAAGACGCGAGCCCACCCTACACCGGCCCCTTCTGCGGCCGCGCTCTTGTCCACACGGACTTCACCCCCAGCCCCTATGACATCGAATCCCTCAAGCTCAAAAAAGGAGATATCATTGAAATCATAGAGAAGCCCCCAGTCGGGACCTGGACTGGCAAGTTGAACAACAAAGTTGGCTCCTTCAAGTTCATCTATGTGAATATCTTACCCGAGGAGAATATTTTGCCAAAGCGGAAGAGGCGGAACTGCAAGCACAAGGCACAAACCCTAGAGGAGGTCCTGGACAGAATCAACCTGAAGGAGCTCAGCTCACTTCTGTCCATGCATGGCTTCCAGAGTCTGGAAGATTTTAAGGAGCTGAGCGAGACCCATCTCAATGATCTGAACATCACTGACCCTGACCATCGTAAAAAGCTGCTGACTGCTGCAGAGACCATCCTTGACAATGAAAGTGAAGAAGAGgatgagaaggaggaggaagagaatgGCTCTCAGAGCCCGGAGGTGAAATCGGACATCCCCCGGGATTCAGGCTGCTTCGAGGGCTCGGAGAACTTGGAGAATGGGCGCGAGGAGCTCGGCATCATCGAGGAGCAGCTGCAAGGCCTGACAGTGGCTGAGGAGTCCTGAGAGAGATGATGACCCATCCTCTCACACCTTGCATTCAAGGGCAGCGGTTGCAGCCTCCTCCCAGTTCTATACACGGAATAAGAACTTTCAGCAGCTCAGCAGAAAGATGGTTCCATGGCGAGGTCAGCCACCCGCACCAAACTACACGCCAAAGCCATGACCTCCGTCAAAGGAATTTTACAGGCATTACAAACTCACGGATGATTTTAGTGTTGAAGTGCcctttatatgttttaatttattctatgCATGCATTTATGTGGCTTTCCTAATAAGTGAACCCTCTTTTAAAGCATATTTAGACTACAAAGCTTTCAGGGTACTGCCAGATACAGAGCAACAAGGCAATTTGCTTTACTTTTGAGACCTTCATTTCCCAAGACAGAATGGTTTACACTAGGGGCTAATGACAATGTTAATTTAGGACTGTCATAGAACCTAGCCCATGTGTGTGAGGAAGTTATATATTACCtggatattttttaagtatgatATCTATTCTATGTTTGGCATTGTATTGGTATGGAAATTAAATCAGAACACCCtccacaatcacaatcacaatcagtAATCTCAGTATTTGAATGGACGTTAGCTTTAGTTATCTTAGCAAACCAGGTAACGATGCCGGGCCCTATCATGTGGTTGACTTGAAATTGTGGTTGAAGCTGGGCTTTGGTTCTATagattgtaattttgtttttatagatgGATGGCTACTAACACTAAAGTTAAAGGACATCTATCTGAATGCCAGTCTATGTAGTTCATGAGCAAGcaggtatataaatatataccatttatatttatgtatataaatataccaagcctttccgtttttttttttgtttgtttacaggcttaaaaaaacacattgcacatGAATGTTATTGTAGCAAAGTGTCTGATAAATAATTGTAGTTgaaattttattttccaatgtgTATACATAGAAAGTAACTGTTTGTTTTCGTTTGTTAAGTTGGTCTTTATTAATTTAGATGGAGAGCTTCTGTCACAGAGGTAAGTGACTAAGATGTTTTGTCTTAaatttgtctttgttcttttgACAATTCTGTATCATATACAAGGTTTCTAACTATCCACTTTTCTAGAAAGTATTCTTTATCATTCTTTTCCTTTTGAAtgtagaaactttttttttttaaataaatgtatcttttcaca

Function

GO: NA

KEGG:

id description
K23706 SASH3; SAM and SH3 domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106048 lncRNA downstream 226 13751206 ~ 13755469 (-) True G85003
TU105813 lncRNA downstream 1092376 12663009 ~ 12663319 (-) True G84822
TU105803 lncRNA downstream 1252193 12500240 ~ 12503502 (-) True G84812
TU105774 lncRNA downstream 1552868 12198777 ~ 12202827 (-) True G84785
TU105763 lncRNA downstream 1612332 12141960 ~ 12143363 (-) True G84780
TU106057 lncRNA upstream 65176 13836587 ~ 13837073 (-) True G85009
TU106060 lncRNA upstream 86893 13858304 ~ 13862544 (-) True G85012
TU106061 lncRNA upstream 86893 13858304 ~ 13862472 (-) False G85012
TU106062 lncRNA upstream 88877 13860288 ~ 13862472 (-) False G85012
TU106104 lncRNA upstream 158431 13929842 ~ 13930281 (-) True G85044
AMCG00021287 mRNA downstream 31047 13717973 ~ 13724648 (-) True AMCG00021287
AMCG00021291 mRNA downstream 41701 13705861 ~ 13713994 (-) True AMCG00021291
AMCG00021286 mRNA downstream 64523 13680903 ~ 13691172 (-) True AMCG00021286
AMCG00021289 mRNA downstream 76620 13677782 ~ 13679075 (-) True AMCG00021289
AMCG00021278 mRNA downstream 133083 13612442 ~ 13622612 (-) True AMCG00021278
AMCG00021288 mRNA upstream 3628 13775039 ~ 13787257 (-) True AMCG00021288
AMCG00021284 mRNA upstream 109729 13881140 ~ 13896275 (-) True AMCG00021284
AMCG00021290 mRNA upstream 125482 13896893 ~ 13924592 (-) True AMCG00021290
AMCG00021301 mRNA upstream 159425 13930836 ~ 13938158 (-) True AMCG00021301
AMCG00021302 mRNA upstream 177541 13948952 ~ 13951044 (-) False AMCG00021302
TU105989 other downstream 127948 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 954109 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1228001 12527093 ~ 12527694 (-) True G84814
TU104623 other downstream 7209118 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 9004460 4748781 ~ 4751235 (-) False G83761
TU106093 other upstream 98528 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 278563 14049974 ~ 14051897 (-) True G85115
TU106928 other upstream 2469593 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2875728 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2875728 16647139 ~ 16649825 (-) True AMCG00021412

Expression Profile