RNA id: AMCG00021286


Basic Information

Item Value
RNA id AMCG00021286
length 5309
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00021286
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13680903 ~ 13691172 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATATTCCCGCAGCTCTGCGTGAGTCTGCgccgctccaccaatgggatccgtggaattctgcagatgtGCGCAGAACTGCGTACATCTGCGCTACAAAAACGCGAcccttttgcttttcttttccgtTCACCGGAAAGCGGTCTGGAAGTGGTGACGACATTTCCCTTCTGCTTGGAAACTGTCGAGTAAAAAGTTTCTCCGAGACGTCGAAAAGTTTCGGGATCTTTGTGAAGCTGCGACGTTTTAACGGCCGGACCCCTGAACACCGGGCAGCATGTCTTCTCCATCCAGGAGGCTGCAGACCAAGCCTGTGATAACATGTCTGAAGACCTTCCTCATCTCCTACAGCCTCATATTTTGGTTCACAGGGGTCATCCTCCTGGCCGTTGGCGTGTGGGGGAAAGTGAGTCTGGAGGCGTATTTCTCATTGGTCACACAGAAGAGCACCAACGCTCCTTATGTTCTGATCGGGACTGGCGCCATCATCGTCATCTTTGGTCTGTTTGGATGCTTTGCCACCTGCAGAGGCAGCCCCTGGATGCTGAAGCTGTATGCCATGTTCCTAACCCTGGTGTTCCTGGCCGAGCTCGTGGCTGGGATCTCTGGGTTCCTTTTCAGACATGAGATAAAAGCAATAATAAGAACTACCTTTGAAGATGCTGTGAAGAATTATAATGCATCGAGTCAAAACCATGAGGCAGTGGACAACATCCAGAGGAATcTGAAGTGTTGCGGAGTACAGAACTACACTGACTGGGGAGACACGGATTACTTCAAAGAGAAAGGAATCCCCGTGAGCTGCTGCCGAAACCCAAATGAGTGTACACCCGACAACCTGAAAGACCTGAGCAAGGCAGCCAGCGAGGTGTACGGCGAGggCTGTATTTCTCTGGTTACAATCGTGATGGAGTCCAATCTGGGGATTATCGCTGGGATATCGTTTGGGATTGCTTTCTTCCAGCTCATTGGAATCTTCTTGGCCTGCTGCCTGTCACGGTACATCACCAACAACCAGTACGAGATGGTGTAGCCGCAAACTCTCTCAGGTAtggcaacacaacacaggctTCCTCAGCCGGCCCTAAGGCCAGGAAATGCACTTGACGTGTTTTTCTGCTCAATTCTGTATGAGTTTCTGTTTGTAGTTCTAGAAGAAACCTGTGGCATTAATTTGAAGAGGTGATCCTTCTTAAAGACTGGACTCTCTATCTTGCATTGTTTTTGCAAGAGGGTTGATATTTTATCTTTGGTCTAGCTCCTCTGTATGGCCAGCAAATTTGAAATGTCAtgcatcttttgtttttaaagcattgaCAGTATTGGATCTATTATACATCATGTTTATATCTGTAcagggaaaacaacaaataaaactgaatctTCTGGTACCCGCTTTCTCCTTGCGGACGTCTGCAGTGACAATATTTCATATAGCTTGTCTGCAGGACTAGCATTTTTTTGGAAACTACGCTTGTGAATAAGATAGTTATGGCCAGATGACCAATGATGTTAAAAATGCAGCAGAGTCAGCATTAATGTCCAAAAATCCCAGGGTTTATTGAAGGTGTGAAAGAACTAGCCAACCAGAAGCTGTCAGcctagaaaaataataaaaaaaaactaagaaactTCAACTAACTATATTACGATTTCtctcaaaaatcaaacaaaataaataaacaaaaagaagcaAATTCTTGGCTTACACCTTTCAGAATCAAAATGCTCTTTCTTTGAATATTCTGAATCAAACTAATACACAGCTTGACACAACCACCTCCACAGAGCTTAGACTCGCCAGAACTCCCCAGTGATGCAGATGAAGGGGGTCCTATAAACTTTCCGATGCCCCTCCCCCTGTCTGGACTGGTCCAACATTCACCCCACACAAGTACACTTCCATATAGCAatacatattgtaatatatgttatcttaatataatttaaattcaataaatacatttaaacaatttcattaattttataCCCCACTCACATTTACACAGTatgagtaatatatatatatatactaatacCTTTAGCAGCAATTCAAGTCCCCCCCTTAACTTAACACATAGTGGTTTGCTCCACCCCATGAAAGCGCTCCGCCCACTAAGGACACGTCACAATAAGCCTCAACCAGGAAGACCACCGTGCATAAGAATAAGTGATaactacatgaaaataaagctaTTTCATTAAACAAGTTTAAATGGTGCGGTATTTATATGAACCTTTAAAACCTGTTAATATCCTGTAACAATGGATAAACCCACTGACCACTATAAAGCACAAACATAcgtttgtttttatatgcaaCTACGCCCGTTGACTGGGTATTTCCTTGGCAAAACCTGCAAAGCGAGGTAGGTAATACTTTAATCTCCATTCTCTTGATTTCCGTGATGAGGTCTGTCTAACTGCCTCATCACAACGCTTCATTGGCGGAGTTTACATGCGTGTTTTGATCTTACCTCAGACAGTATGCTCAAGTCAAAGATGACAtggccctctccctctctgggttTCCATGTGAGTTTATTGCACTCTGGACAACCTGCTGTTTACCCAACGTCATGTTAATGTAAGGGCAAATGAGTGAATTCATATGTAAATGTAGCTCTTTGTACACCTctcatgctgtttttgcaggaacaTGACAAAGGGTGTTTTACGAGCACAGAGAACAATACTCGAGACGCTTACATCACCGattccatggctgtcatgtgaaaACTTGTTCAAATTGAAGTGTACCCTTTGCATCTAGTTTAATActtttactgatcttacccgAGTGTTTTTTCACATCACTGAAGGAGCTAGCAAGatgtgaatataaatgtttatgaaGTTAGGATAACAACACGATGTATAGGAatagtgcacaacagacccacaacaatacaGAGAGCATAATGATGATAGGAAAGCTAAAACCACATTCCGCATGGCCATTcacctgaaatacaccattgctaaccTTGAAATGTGCATCTACAACTTACTTTACTTttaacccacaataaactgacccattatcttgcacttttataatgtggccatttaaggatatataagATCTCTGTAGCatttacatgtgaaatgtgGGTTTCCATGTGGAAATGGgcgtgtttttcttgtttgtcatATTTATGTCATTTACTCGAGTATTTGGGATTTGGGGCACAGACCTGATTCTCCTGAGTTTTCAGGCGAAACGTGCACGCGCATCATCACTTCACGacttaaaaacactgcatggaAGCTCCACCATTTCCTCCGTCTGGGTCTAGTGTAATTGTAAGAATTTGGTTTATAACCTACACTTGTAAAGAAATAACATGCATGTTTTGAAAATCTGGTGAAGCAAATGACTTTCATCACTGACGGCTAGACCGTTTGCCTTTTTGcctatgttttttctttttggctgCTCACAACTTGACTGAAAGGGTCTTGTTGGTTGTAGAATTCCTTATCGGAAATCTCTCTTGGATTATCTGAAGAGGGCTGTGTTTTTGTGACTGAAAGTGGTACTTAAACTCCCTTGTATCATTTATCTTCCAGGATACAGACGTGTGCCTGCAGAAAGCCAACTCAAAGGGAAGATGgatctgcttttttaattggatgtttttttttttttagttagtttttttttcttcctttaaagACTTTTTATAACTCTTTCTGGCTACCAGAATTGAGGGAAAGAAGGAATAAATAAGTTCATTGccaaatgggggaaaaaaaaataaaaaattaaaaggatCAGGATCAGGTTACACCACTACTCAAATGCTTTTGATATTTATAAACTGGGTGTATTGTGAAGAACGTGCCAAACACTGCAAGCAGCAAAGTTTTCTTTAAACATATGTTCACACAAGGGTTTAAACCCTTTCAGTAGCATGCCAGTTGAAATAGTGTGATTATTCCATTTGCCGTTTCAGTTCGTTTTTCTTGCTCGTAGAATTCATACTGCAGCTCATTACAGCCTTCCTGACTCTTTAGAAATCAAACCGAGTGTTTTGTAACAAAATACCAAACGGCATTGCTTATTCTCTTCTGATGTACGGTAGAGAGAGTCAATACTAAATCTGTGCATTCTGTGTCATATAAAGTGGCCTTAAGAATTCCTCTTAAAACTCcactaaaattaaatgttgtagTTCATTTGTATCACAGGTCTTCAACAGGGTTGTTCTGTACTAATATTCTAGTACTTTTGCCTTTTGGAAAAGTGTTAACGAGCTGAACTATTTTCTCATGATAAGCTAAGGGACACAAGTAATTACTATCTAACCAGGTAATAGACCAATTATCATGCAGTATAGCTATTTATGTCAAATTGCCCATATCCCTCTGCACATGCTGTGACAGATGTATCTGtttagaatacaaaatacaacagtttTGTTATGTACTTGTAGAATTCATTTTATAGATGTAGGAATAAAAAGTAAGACTGCAAATTGCTTTGAATGTTTGTATCCATGATTGCTATTGCCTTATGCTTTGTGACCAAATTATTCCTGCTTGTTGCATTGGCATTTCCTCACAGAAAAGTAAAGGGACTATTTTGGATGttggcatttaaaatatagatgTGCATTCTTGTGTGTAAAAACATTATAGTCTGAAATGTTCAATTAGATTTAAGATTTGGTGCAGCTTTTGGAAGAAGAAAAGTCCTGCTGGATTCAATTAGGATGGGTAGTTTTTGTACTTGTATTTTCtttggtggggaaaaaaaaagtgttgaatgttagtgtctttaaaatgttggtcagtttcagtatttagtattttttcctTTAGGTTTATAATGCAGATTTGCTGAATTCTTGTGCAGCTTTGGTTATTTGACAGTCTGTGAAAATAGTAGCACTAGTGTTtagattaaaaaagaataaatatacaacaatatTTACATGTCACATATTGGCTTGTGCAAGTCTAGTTCAATCACCCTgcatgtttgttctgtttttcttccttgcTTTGTTAATCTTTagatatttagatttttaactAACATTATCCATGAGAAATCTTACCAAGGCAACATATAATTTGTGCTAGGAGGCATACTTTTGAAGCCAATGTTTTAAAGTTTCTGCTGTCAGATACCTGTAGTCTGCATTCAGTGCAATAGATatagtatattttttgtattttttaatgtagtgttaAAGGCTGTCTGACATTTGTTTGCAGAATCCGCTTTTGAAGAAAATacttgaaacaaaataaattaaactaaccCTCCCCCAATATCTCTTTATTTTGGATTGTCTTCAC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105813 lncRNA downstream 1017584 12663009 ~ 12663319 (-) True G84822
TU105803 lncRNA downstream 1177401 12500240 ~ 12503502 (-) True G84812
TU105774 lncRNA downstream 1478076 12198777 ~ 12202827 (-) True G84785
TU105763 lncRNA downstream 1537540 12141960 ~ 12143363 (-) True G84780
TU105760 lncRNA downstream 1547746 12131302 ~ 12133157 (-) True G84778
TU106048 lncRNA upstream 60034 13751206 ~ 13755469 (-) True G85003
TU106057 lncRNA upstream 145415 13836587 ~ 13837073 (-) True G85009
TU106060 lncRNA upstream 167132 13858304 ~ 13862544 (-) True G85012
TU106061 lncRNA upstream 167132 13858304 ~ 13862472 (-) False G85012
TU106062 lncRNA upstream 169116 13860288 ~ 13862472 (-) False G85012
AMCG00021289 mRNA downstream 1828 13677782 ~ 13679075 (-) True AMCG00021289
AMCG00021278 mRNA downstream 58291 13612442 ~ 13622612 (-) True AMCG00021278
AMCG00021271 mRNA downstream 100251 13575748 ~ 13580652 (-) True AMCG00021271
AMCG00021273 mRNA downstream 113075 13566358 ~ 13567828 (-) True AMCG00021273
AMCG00021269 mRNA downstream 119490 13557156 ~ 13561413 (-) True AMCG00021269
AMCG00021291 mRNA upstream 14689 13705861 ~ 13713994 (-) True AMCG00021291
AMCG00021287 mRNA upstream 26801 13717973 ~ 13724648 (-) True AMCG00021287
AMCG00021285 mRNA upstream 64523 13755695 ~ 13771411 (-) True AMCG00021285
AMCG00021288 mRNA upstream 83867 13775039 ~ 13787257 (-) True AMCG00021288
AMCG00021284 mRNA upstream 189968 13881140 ~ 13896275 (-) True AMCG00021284
TU105989 other downstream 53156 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 879317 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1153209 12527093 ~ 12527694 (-) True G84814
TU104623 other downstream 7134326 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 8929668 4748781 ~ 4751235 (-) False G83761
TU106093 other upstream 178767 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 358802 14049974 ~ 14051897 (-) True G85115
TU106928 other upstream 2549832 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2955967 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2955967 16647139 ~ 16649825 (-) True AMCG00021412

Expression Profile