RNA id: AMCG00021291


Basic Information

Item Value
RNA id AMCG00021291
length 1818
RNA type mRNA
GC content 0.57
exon number 14
gene id AMCG00021291
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13705861 ~ 13713994 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTggcaggggtcagaggtcatcaATGTGACGTTCCTGACGGAGGCGGAGCGGGAGCTGATCCTGGAGGTGTTGCGACGTGATGAGGAGCTGCGTAGGGTGGAGGAGCAGCGTGTGCGAAGGCTGAAAACGGAGCTCCTGGAAATCCGGAGAAAGGGCGCCAAGCGCAGCAGCAAGAACTACAGCGAGCGTACGTGTGGGCGCTGCCAGGAGCCCCTGGGCAGGctgagtgtcagtgtcagtcagtgtcgGAGCTGCAACCACAGAGTGTGCCGAGAATGCAGGACCGTCTGTCCCAATGGATCCTGGGTGTGCAGCGTCTGCGCCAAAGAAGCAGAGCTGAAGAAGAATACCGGAGACTGGTTTTATGACCAGCGCATCAATCGCTTTCTCAACGCCCCCGGCCACGACCTGGTGCGAGCCTCACTGAGGAGGAGATCCCTAATCAAGAAGCGTGAGACAATAGGGGAGGTTCTGCTACAGTCTACCGAGCTGAACCCAGGCCCTCCTTTCACTGCTACTGCCCCTGTACCCAGTCCCAGATTCAGAGACCTGCTGGCCATGGACGAAGGACCCCCTCCCGAGGCCTCCAGGCCCTCCGAGGTGCAGGAGCGGCAGCGCAGTGACACAGAGTCAATGGACAAGGTCAGCCTGAGCAGCTCCAGGACAGACACCGAGTCCTCCCGATTGACACCAGTCCTGCAGCGGAAGGACTCGGCAGAGCCAGGGTTGACCGTGGAGTCAAGCCCCATGGGGTCCAGTGTGTCCACTGTCCACATCCCACCAGAGGACACAGATCCAgacgaggaggaggaggaggacataGACAATCTGAGCACCATGGGCAGCATGATGAGCGTGTACAGCGAGGCAGGGGACTACGACAGCGCTGTGGTCAGCGGAGACATCGTGTTCAAGCTGAGCTATGACGAGCAGGAGCAGAGCCTGGCTGTCTTGATTAAAGAGTGCCGAGACCTAGCCCTGGGGGACTCTGCCAGGAAACGGTGCAACCCTTATGTGAAGAGCTACCTGCTCCCAGACACGTCTCGCCAGAGCAAGAAAAAAACTGCCATCAAACGCAACACCACTAATCCCTCCTACAACCAGACACTCAAGTACAACATCAGCCTTTCCCAGCTGCTCATGCGTTCCCTGCAGCTCTCAGTGTGGCACTATGACAGGTTTGGACGGAATGTCTTTCTGGGTGAGGTGGAGCTCCCTCTGGACAGCAGAAACTTCAGTGAGGCGCCAGAGGAGTGCATAGCTCTCCAAGGGAAGGTTAAGGCTCAATCTGGGACCTACGCTCAGTACAAAGGAGAGCTTGTCATCTCCCTCAAGTACATCACTCCAAACAATCCACCCGCAGACAAGGCTAAAGtcaagaagaagaagaaggaagaagGTGGGGACCTGCATGTCTTGATCAAAGAGGCCAAGAACCTGACAGCTATGAAGGCGGGAGACTCGTCAGACTCCTTTGTAAAAGGGACCAAGCTGACCAAGAGGAAGACCCAAGTGGTGAAAAAGACTCTAAACCCACACTACGACCACACTTTTGTGTACAAGGACCTGAGCCTGGAGGATCTGAAGAACATGTGTCTGGAGCTGACCGTGTGGGACAGGGAGGCCATGTCCAGCAATGACTTCCTGGGGGGCATCAGACTGAGCACAGGCACAGGGCTGCACAAAGGAGTGGCTGTAGACTGGATGGACTCATCGGGGGAGGAAGTGTGCCTGTGGCAGAAGATGATGCAGTACCCTGACTCGTGGGCAGAGGGCACTCTCCTGCTACGCTGCACCatggggaaaaacaaatga

Function

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105813 lncRNA downstream 1042542 12663009 ~ 12663319 (-) True G84822
TU105803 lncRNA downstream 1202359 12500240 ~ 12503502 (-) True G84812
TU105774 lncRNA downstream 1503034 12198777 ~ 12202827 (-) True G84785
TU105763 lncRNA downstream 1562498 12141960 ~ 12143363 (-) True G84780
TU105760 lncRNA downstream 1572704 12131302 ~ 12133157 (-) True G84778
TU106048 lncRNA upstream 37212 13751206 ~ 13755469 (-) True G85003
TU106057 lncRNA upstream 122593 13836587 ~ 13837073 (-) True G85009
TU106060 lncRNA upstream 144310 13858304 ~ 13862544 (-) True G85012
TU106061 lncRNA upstream 144310 13858304 ~ 13862472 (-) False G85012
TU106062 lncRNA upstream 146294 13860288 ~ 13862472 (-) False G85012
AMCG00021286 mRNA downstream 14689 13680903 ~ 13691172 (-) True AMCG00021286
AMCG00021289 mRNA downstream 26786 13677782 ~ 13679075 (-) True AMCG00021289
AMCG00021278 mRNA downstream 83249 13612442 ~ 13622612 (-) True AMCG00021278
AMCG00021271 mRNA downstream 125209 13575748 ~ 13580652 (-) True AMCG00021271
AMCG00021273 mRNA downstream 138033 13566358 ~ 13567828 (-) True AMCG00021273
AMCG00021287 mRNA upstream 3979 13717973 ~ 13724648 (-) True AMCG00021287
AMCG00021285 mRNA upstream 41701 13755695 ~ 13771411 (-) True AMCG00021285
AMCG00021288 mRNA upstream 61045 13775039 ~ 13787257 (-) True AMCG00021288
AMCG00021284 mRNA upstream 167146 13881140 ~ 13896275 (-) True AMCG00021284
AMCG00021290 mRNA upstream 182899 13896893 ~ 13924592 (-) True AMCG00021290
TU105989 other downstream 78114 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 904275 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1178167 12527093 ~ 12527694 (-) True G84814
TU104623 other downstream 7159284 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 8954626 4748781 ~ 4751235 (-) False G83761
TU106093 other upstream 155945 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 335980 14049974 ~ 14051897 (-) True G85115
TU106928 other upstream 2527010 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2933145 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2933145 16647139 ~ 16649825 (-) True AMCG00021412

Expression Profile