RNA id: AMCG00021292


Basic Information

Item Value
RNA id AMCG00021292
length 2260
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00021292
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14069330 ~ 14073125 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGATCCGCTGGAGGGCGCTGAGCTGGAAGCCCCTCCTCCAGCCAAAGCCAGCCTGTAACCTTTGCCCTTTCCCAGAGTTCCCTCTCTTTCTGAACCGCCATTGTGGTGATAGGGTTGTGGATTCACAATGCAATGTCGTGGTGTTGAAGTTTGGGGAAATTAACCTGtcatcacaCAAGACCTTCAGGATCAAGCGCTTCCTCGCtaagaagcagaagcagaacaGGCCCATCCCGCAGTGGATCCGCATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGAACCAAGCTGGGCTTGTAAACTCGGCAGTTTGCTTCTTCACATCAGCCACCACAGTTCTTCTCTACGCAGACTCCTGGGAATCCCCAAGAACACATGCCATCTCCAGTGGAACACATCTAATTGTACAGATACTTTGCATATTTTCATATGTGTGCAATAAAAATGAGACCCggtgaagaaacaaaaatgtgtagtttgttttgcagtgcttTGGAATaactggttttcattttcaggttttaaagGCACTCTACAAGGTGGAGCAGCTGTTGCATGCAAGATTATAAATTAAGCTTTGTAATCTGATGAAAGCATGATGTACTCgatgctttattttttaccgtacatttttattgtactgtTGCCAAATGGATTTCAAAATTCTTAAAGGTTCATCTTGTCATTTTTAGAAATTGAAAATAGTGTTCCTGATGTTCAGATAATACATTACTAGAAATGTTCCAAGTTAAATTCCATGTGGTTTCAGTATTGATTTGAACAAATGGGCAAATGCTCTCAGACTGGCATGGAGAATGGCAGTGGCAATCTTCAGTGTTCTCTAGAAAGGCTTAAAGAATGAGATCAGCAATGATTTTAAGCACCCCTTCACAAACCATGAACTGAAACTGGGATTTAGGGTAAGTGGGTGTGAAAATGCATCCATCCCTTaacctttttagtttttatcatACTTGGGAGGTTTGAGCTTTTAAGAACAGTctgggagagagaaacatttgGAAGGAGTGGTATTGGCTTAGTAGGCCTCAGAAATGTAAGACAAACTTGCACTTGTACACTCTAACCATCTTTGTACAAACAGTCTTTCTTTCAGGTAAGGGTTGCTTTTCTTCTGATAACAGAATTGGTTAGAGATTTGTATGGGCCAAGTTGGAAATTTtggttttaactttgcctttaAAATGGGGAATGTAAGTTAGAAATCATTTGAAAGGTTAGGTTGAAATCTAATTTATGCTCTGCAATGTGGCATCACAATTCGATTCATAAGTGTTAGGCTTATTTATCTAATTGACAATTTGTAAATTTAAGTAGTTTACtgtagaagaaaaggaaaatatgaagTGATTAAGTAATGATTCTAATAGGGACTATATATAGAAAGTTTCTTTGTTACATTTCTGGTTTCGAGAGCAATATTGAGtaatttcttcttttcatgGATATGAAGTTAAAATTTAAAATCGGTTATATTTTTGTCCCAGGTTAGGGTTAGACTCCACAGTAAACTTAAGCTTTCATTAAGGTTAGGCTTGTTTTTCTCCTGCTTTAACTGAGTTGGGTGTAGATATGGGCCTAGCTTGAAATGTTGCTGTTGGCTAGGGATTGGGTTCAGGCTATTTGGTCTTAAAATGTGGCCAGTAACCTGCTGCTATATGGTGGAATATTGTTAAAAGTTAGTCTTTTCTGCTCTCCAATGAATCACAATTCAGAATAAAGTATGATTTAGGTATaaggttaattgttttagtttttttgtccaTGTTAAGATTAATTAAGATTTTGTTTATGGTGTGTAGGTAATGCATTAAAGCATGCCTGCTTGAATTAGTTTAGTTTCAATTTCAATCTTGGGTTCTGCAGGAATTGTTCATGCATGTGACctgctttttcatttgaagtttGGATACTTTCCAGGTTTCTGgactttatttctgtttgtttgtggacCACATACTTATGTCCTCTTGACAGTGTCCTGGGAATCTAAATATGCGTGCTTTAGAGAAATCTAGATTAACAGCAGCTGTGTCAGAAATTCTGCTGCAGATCCACCAGAGGGAGGGCTAGTCCAAGGCAGTGTGTGGGAATGGGGACTCTTCAATGcaagatcatttaaaaaggaaCCATAACAAATCCTACATTTGCAATTGTGTGTTCCTAATCTTTGAGTTGCTTCTTCGATAACTGATTCAGGTGTGTAAGCCATCATTCT

Function

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0019083 viral transcription biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106162 lncRNA upstream 33668 14034215 ~ 14035662 (+) True G85090
TU106156 lncRNA upstream 50389 14016133 ~ 14018941 (+) False AMCG00021296
TU106138 lncRNA upstream 66911 14000596 ~ 14002419 (+) True G85069
TU106122 lncRNA upstream 105106 13963109 ~ 13964224 (+) True G85056
TU106071 lncRNA upstream 169349 13896919 ~ 13899981 (+) True G85019
TU106180 lncRNA downstream 36553 14109527 ~ 14152543 (+) True G85098
TU106304 lncRNA downstream 299746 14372720 ~ 14373557 (+) True G85185
TU106330 lncRNA downstream 383654 14456628 ~ 14495849 (+) True G85202
TU106507 lncRNA downstream 1053793 15126767 ~ 15127233 (+) True G85344
TU106508 lncRNA downstream 1054315 15127289 ~ 15127965 (+) True G85345
AMCG00021295 mRNA upstream 938 14063972 ~ 14068392 (+) True AMCG00021295
AMCG00021293 mRNA upstream 13349 14053219 ~ 14055981 (+) True AMCG00021293
AMCG00021294 mRNA upstream 21529 14041440 ~ 14047801 (+) True AMCG00021294
AMCG00021296 mRNA upstream 35773 14016133 ~ 14033557 (+) True AMCG00021296
AMCG00021297 mRNA upstream 72722 13987124 ~ 13996608 (+) True AMCG00021297
AMCG00021306 mRNA downstream 7576 14080550 ~ 14105940 (+) True AMCG00021306
AMCG00021305 mRNA downstream 37484 14110458 ~ 14117266 (+) True AMCG00021305
AMCG00021312 mRNA downstream 106204 14179178 ~ 14197672 (+) True AMCG00021312
AMCG00021317 mRNA downstream 248911 14321885 ~ 14339956 (+) True AMCG00021317
AMCG00021322 mRNA downstream 417159 14490133 ~ 14493431 (+) True AMCG00021322
TU105723 other upstream 1968623 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 3082156 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4645911 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 5435920 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6948093 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 1990626 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2517207 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 2583670 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 2583670 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 2924903 16997877 ~ 17004131 (+) True G85869

Expression Profile