RNA id: AMCG00021298


Basic Information

Item Value
RNA id AMCG00021298
length 2155
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00021298
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14037233 ~ 14040889 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaaaaggtggtctgtgttttgttgtctGCGGATATCGTGTATATTGGCAGAAAGCGGGGAGGGAAGGCTTGGTTTTGCAGATGTCGAGCATAAAGCTGATTTCTGCAGCTGACACACAATACTCTGGGACACTGCTGAAGTCTCTTAACGAACAGCGAACTGTTGGATTGTTCTGTGATGTCACCATTATTGTTCAGGACCGCAAATTCAGAGCCCACAAAAACATCCTTTCAGCCTCAAGCTCATATTTCCATCAGCTTTTTGCTGTGGCTGGACAGGTGATAGAGCTTAACTTTTTGAAGGCAGAGATTTTCGAGGAAATCTTGAACTACATCTACAGCTCGAAAATCATCCGGGTTAGGTCTGACATGCTAGAGGAGCTGATCAAGTCGGGGCAGACGTTGGGGGTGAAGTTCATCGCTAACCTGGGTCTGCCTCTGTCTCAGGTCAAAGGCTTGCCTGGCTTGTCAAAAGATACTACAGCAGATGGAGTGGGGTCATCCTCAGAGTCCAAAGGCGCTCAAAACAACACGGGGACAAAAAACGACCTCATCACTCAGGAGGACAGCGCAGGCACCATGCCCATCATAACAGAGGCCTTCTCTCTTTCTGCCGAAGAGTTCAAACAGACCGACGGCTACATGGATGATGACTCTGATAatgatgatgttgtttttgtctccCAGATTGCTTCCCCAAAGACAGGGGTGTCCAGTAGCAACCCTCAGCCAACCTCTGAAATCATTGACCTTGATGCTGAGGATGGTGTTGCTCCAGGGGAAGGCAAGCCAAAGGAACCAGCTGCTAGTCCTACTGAGAAGAAGGACGAGAATGGTGAAGACAAGCCAGATGAGGTACCTTCCTCTAAAGCATCAGAAGAAGCCAAGACTGCCCCTGTCCCCAGCTCTTCCCAGACCCAGCCTGACTCCAGCTCCCTGGCCTCCCCCCCTGAGCACGAATCCCCCGACACCAGTACCAACCTGCCCCCTTCCCCTGCTGGCTCCTCCTCGTGGGACAGCTTCTGCAGCCCTCCTTCCACCCCAGTACTGGTAACCAGCTCCCCTATAGAGGCCTACCAGAGCCCCctgcacaaagaaaaacatgaaggCACAGGTGTCCAGAAGAAACGGGTGACCACGGTTATGGAGGCGTCATCCGCTAAACCTGGGGAATTCAAAATTAAGCTCTCTGATGTGAGGTCTTCAACCAGCACAAAGAATGGAGCAGGGCAGAGTGCCTCCACAAATGTGGTGGCGGGGAAAAAAACGATAACGCTAGACAAGGCATCGGAAATTGATTCCCTATCTACGGGCTGTAAGGTGTATGCCAACATTGGAGAGAACACCTATGACATTGTCATTCCCATGAAGGATGACCCAGGTGAAGGGGATTCTAGAActggtgggggaaaaaaatctagaaTGTCCTCTCCTTATGTGCCAGACTCTCCAGGCAGGAAAAGAGTCAAAGTCAGACACGATGACCATTACGAGCTCATCATGGACGGGAGGACCTTTTACGTGTGCATCGTTTGCAAGCGTTCCTACGTGTGCCTGACCAGCTTGCGGCGGCACTTCAACACCCACTCCTGGGAGAAGAAGTACCCGTGCCGCTACTGTGACAAGGTGTTTGCCCTGGCGGAGTACAGAACAAAGCATGAGATCTACCACACAGGGGAGCGACGGTACCAGTGCTTGCTGTGCAATGAGTTTTTCATAAACTACCAGCTGCTGTCCTCCCACTGCAAGTCTGTGCACAACCAGGATCCCTCAGGGAGGAAAGAGAAAGATGAAGCTGAGAACAACTTGTACCGCCTGCTCCCTTGTAAGTCCTTGCAGCTCAAGCCGTACTCCTATGTTTCCAACTCCTCAGGTGGGATACCCATCATAAATGAGGAGGGGCTGGTGTACCACGTGGATCCTGGCAAGACGCCCACCAACCCTAGCTCTGGGCCTCAGCTGCCGAGCACAGGCAAACAGGTAGTGAATTGGGATGATATCTTTGTTCAGCCAGGGGCACAGCCTGAGACTTATGTTAACCCTGCTGAAGGCACATCAGAGTTTGAATTCGTTATACCAGAGACCTACTGAGATCGAGAGACTCCCTGCTGGAGGCGGTTTGTTTTCACCAGGGTGGATGGGTTGGAAGTTGGCA

Function

GO: NA

KEGG:

id description
K10507 ZBTB33, KAISO; zinc finger and BTB domain-containing protein 33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106163 lncRNA downstream 588 14034224 ~ 14036645 (-) True G85091
TU106161 lncRNA downstream 3233 14029690 ~ 14034000 (-) True G85089
TU106125 lncRNA downstream 68851 13968135 ~ 13968382 (-) True G85059
TU106124 lncRNA downstream 70323 13965936 ~ 13966910 (-) True G85058
TU106113 lncRNA downstream 87413 13948307 ~ 13949820 (-) True AMCG00021302
TU106209 lncRNA upstream 17031 14057920 ~ 14062793 (-) False AMCG00021304
TU106213 lncRNA upstream 17031 14057920 ~ 14071206 (-) True AMCG00021304
TU106210 lncRNA upstream 28454 14069343 ~ 14071206 (-) False AMCG00021304
TU106212 lncRNA upstream 28454 14069343 ~ 14071206 (-) False AMCG00021304
TU106214 lncRNA upstream 28454 14069343 ~ 14071206 (-) False AMCG00021304
AMCG00021300 mRNA downstream 24073 14000596 ~ 14013160 (-) True AMCG00021300
AMCG00021299 mRNA downstream 73022 13954051 ~ 13964211 (-) True AMCG00021299
AMCG00021302 mRNA downstream 86189 13948952 ~ 13951044 (-) False AMCG00021302
AMCG00021301 mRNA downstream 99075 13930836 ~ 13938158 (-) True AMCG00021301
AMCG00021290 mRNA downstream 112641 13896893 ~ 13924592 (-) True AMCG00021290
AMCG00021303 mRNA upstream 5146 14046035 ~ 14047696 (-) True AMCG00021303
AMCG00021304 mRNA upstream 17029 14057918 ~ 14062793 (-) False AMCG00021304
AMCG00021311 mRNA upstream 25717 14066606 ~ 14073961 (-) True AMCG00021311
AMCG00021309 mRNA upstream 33329 14074218 ~ 14075345 (-) True AMCG00021309
AMCG00021310 mRNA upstream 35376 14076265 ~ 14106859 (-) True AMCG00021310
TU106093 other downstream 119365 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 409486 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1235647 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1509539 12527093 ~ 12527694 (-) True G84814
TU104623 other downstream 7490656 6544492 ~ 6546577 (-) True G83864
TU106219 other upstream 9085 14049974 ~ 14051897 (-) True G85115
TU106928 other upstream 2200115 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2606250 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2606250 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 3257991 17298880 ~ 17303470 (-) False AMCG00021435

Expression Profile