RNA id: AMCG00021307


Basic Information

Item Value
RNA id AMCG00021307
length 3805
RNA type mRNA
GC content 0.43
exon number 15
gene id AMCG00021307
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14125654 ~ 14137967 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCTACAGGAATCCAAAGATGAAGGAATTGCCAGTTTCGAAGTTGAAATTGATTCAGTTGTCAACTGTCTGGTGTTGCACAAACCTGCAGAATACACCCTGTTAAAGAGCTCCCTGCAACAGGTGTTCCAGTGTGCATACTCCCAGATCATCCTGCCCTGGTACAATGCCCCGGAGCCCGGGGACGGTCCGCCTCTCCACGGGGCTTTGCTGCAGGAGTTCAACCTTGCTGTGGATTCTGTGATCAGCAAAGCCCAGCACACGGACACCTGCGAACTGTTCGTGGGCTTCATCAAGATCCTCACACAGCACCTCAAGAACACCAAGCAGAAAGAACGgagaAAGTTGTTCTCCTCCAGGGCGGAGGAACTGGCTATTCTTAGGACGTTTGCAGATGCCCTGATCTGCAACCTGCTACCCTCCCACCTCCAGCAGATTAACTTCATCCATTGTGCCTTGAAGGAAATTGTGGCTTTGAAAGATCCTGATAACTTAAACCAGTTGGTGGTGAAATGTTTTGATGCTGTGGCGTCCCAGAACCCTGCAGAAGATAATGGAGAGATGGAGCAACAGACTTCACCCTCACAGGAAGACCAGCAGGATGGAAAAATCACAGAGAATCCAACTAAGACTGGTGACAACATAAATGATGACAAGGATAAAAAGAAGGgtaaaaaaataaaggaacatTTATCTAAActtataaagaaaattaagcctaacaaacttaaaaagaaGAATCAGAAGGCGGTGTGTGAGACGGATGGGCTCTCCTGTGTCGGGAGTGTCCAGTTCCGGTCATTGGAGCTCCAGGGCAACGACTGTGCGGAGGACATTGAGGACGACTCTGGCATCAGTCACAATGACTCCTGCAGTGAAGGGACAGAACTGGAGAGTGACTTTGACAGCCTTCAGGAGGACATGGAGTTCAAGCTGTCTTACGAGATGTGGCGTGTGGGGCATTGGAAGGTCACAGTTACACATGCAGCGGAGGAGGAGCAAGAGCTGTGTTTCACAATGCGCGTGGAGGAGAGAGACGACCCAGAGTCCCTCCACTGGGAAGTGAGGAAGACGTTGGCAGATTTCCAGGCCCTGTACAGCTGTTTACAGAAGactTCAGATCTACCGTCCGTAGCAGGCATTCTGGAAAGCAAAGGCCAATCACTGGATGAAGAGCTCAGAGAGAGAACTAAAGTAGAACTGGAAGCTTTTCTAAGGGAAGTGCTGTCAGATGGCTCTGAGGGGCTGAGTCCAGAGGTGTTCCAGTTCCTGTGCCCCCTGGAGAAGCTGCTCGACGTGGACGAGTCTTCAGAAGGAGTCTGGGGTCTGCTCTGCAGCCTGGCCACGCTCCTCACTCCAATGCAGGAAGAAGAGGACAGCACAAAAGAGGCATGCAGAGTTAAAGTGCCTGATGGACCAGAATGCCTGGACACACAGAAAGGCAGCCACAGAGAGGCACAGGGAAACAGACACCGGGAAACAGAACCTGGAGGGTCTGTAAATGCTCCCACCTCAAACCACTCAAGTTCCCACGGTGAGCTTTCCATAGAGTCCGCTGAGGGCACCAGGAGCGGAGACAGTGACTCGGGCAGCAGGACGGATTTGTCAAACAGAGTCAGTTCAGAAGACATCTCTGCAATGGCAGTATCGGACGATATTATAGAATGCAGAGCCCTTTCGATTGAGGGGACGGGCTCCACCGACAGTGAGGGTGACCCGGGAAATGGAGATGTTGCTTCAGGCCAACTTTCCATCAGTCAACCCCTTGGGGCTGACTCCACAGAAGGCTACTGCTTTCCATTCAGGAGTAGGAAGATTAAGAAAGAAATCCCAGTTCCAGAAGGGTCTCTGGGCATTCCTGGTGCACCGGTGCAGGGCCAGGCCAAGAAAGACAAGGTAGAGAAAAAGGATGAGAAGCAGCGGAAGAAAGAGCCCAACCAGCCAAACAAGCAGGATGTCACCAAGTCAGTTTTTGATCTGCTCAAAGAGATGGCTGGTAATTCAGTTCTTCTCAACATGGTACAGACGGCTTTTAAATTACCTATGTTGGAAGGGTGGTTAAACAAAATCTTCAGGAGACTCAACCCCACTGAAGAGAAGCTGGCTTCCTATGTTGACATGCTGAGAGAGAAACAGTGGCCTGGAGGGAGGCCAGCAGGCTCCGGTGTGGACAGGACgacaaaagagaaagaagagacCAAACGCAGAGCACAGGAGCTATTGCATTTGAAAGTGTCATATCTgaactgtgttttaaataaaagtaaagttgACGACCTATTTAAGATCTTCCAGGAATATGAAGAGAATGAGAAACTGGTTTATATGCTGCTATCATTTCTGTTGAGGACTCTCATGCCTGGTGATTTATCGCTGAATGTGAAGGAATTACTCTGGCTGAACAATCCGATGTAAATTGAATCAATGTGAATATCAATGTGGAGTTTGAAAACCATTTAACAAGTCAtggaattgtattatattttatgtgaacTGCTTATATACCAGGTAATTAGGATGTTTTCAAACTCTGGAGAAGGAACCAACTAGAATTCTGGATATTGTATCTTGCACAAtttgttaattatatttgtaattatgatGGACTACAGTACATGTTGCAAACCTGTTACTTTTTTCGTATTTCAGCTGCACTTTGACAgtggatgtttttaaaatgtattattacaatcaTTGACTACAGCTGGGAGATTCTTGAGGTAATTTACCAGTTGTGGACCaatcaaatgtaaatcaatttctttttaaagtttgttgccaatataatgtttttaggCATGATTACTGCTTTCAATACTTCCTGTTGTCAGTCATCCATTCTTCCAACATGAAATGTCTTCCAAAGATGCAACAATATAGTACATATTTTGATGAATATAAATTAGCTGTTAATGTTAAGTTCACTTGTcaatatttccttttaatatatataatatatacttaaagccatctatttattattgtacttaTAAATGCAATATTGCACAATATAGAATATAGGAAAATAAGAATTATCAGTGTTTTGGGGGAattcattgacattttaaatgtatatagctCAGCTTAGTAAATATTGGGTGTGGTAAATGTTGTGCATGAAAGCATCACAGGACATgctgaatgttttgtttgtttgtatattggTTTCAGTAGCATTTCGTAATCTTAAAAGAGTTCTAAAGTGTTTATATTCCAGGTTTTGTTAGGGGGTGCAGATATAGTTGAATATCTGTAAAGTATGAACGAATCTGCCTTCCTGTCTGgcattgttcttttaaatgttttctaatgaCTAAAACTATCCTGGCTGATATTAGaaaattggaaaatattttatattttatgtaccaCCTCTGGTATTTCTCTGATATTACCAGCCAGTTGTACAGGTCAGCATAATCCTTTCCTAACGGCAGGTCCCAGTTTGGTATCTAGCAGTATGGTCTAGGAAAACAATACAGCTGAAAAGGTGGGGGAAACTGtggcaaaagcaaaaatatCTGCAATAATAATTGCATCTCAAGCCTTTTAATTCATGGCATGCTTGGCACGCACTCCAGAGCATTAAAACCTGTATATTTTCCCCCTTTCCAGATGTGAATGTCTTACTCATTTGTACTGTGAAGcatttgttattaatgttaatCATCTTTTTAAgagacaatgttttatttcctatCACAGCTTGAATGGTTACTTTGTTCTTCTGATGGAGCTTTAATTGTATTCCATTTTGACtgtgattgtttttcattttaataaaacaaacttcatAAAGCAA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106215 lncRNA downstream 54329 14069343 ~ 14071325 (-) False AMCG00021304
TU106213 lncRNA downstream 54448 14057920 ~ 14071206 (-) True AMCG00021304
TU106403 lncRNA upstream 411625 14549592 ~ 14554392 (-) True G85251
TU106493 lncRNA upstream 903096 15041063 ~ 15043903 (-) True G85332
TU106657 lncRNA upstream 1181131 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 1243385 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 1293075 15431042 ~ 15432371 (-) True G85470
AMCG00021308 mRNA downstream 1125 14118088 ~ 14124529 (-) True AMCG00021308
AMCG00021310 mRNA downstream 18795 14076265 ~ 14106859 (-) True AMCG00021310
AMCG00021309 mRNA downstream 50309 14074218 ~ 14075345 (-) True AMCG00021309
AMCG00021311 mRNA downstream 51693 14066606 ~ 14073961 (-) True AMCG00021311
AMCG00021304 mRNA downstream 62861 14057918 ~ 14062793 (-) False AMCG00021304
AMCG00021316 mRNA upstream 9953 14147920 ~ 14167490 (-) True AMCG00021316
AMCG00021315 mRNA upstream 61151 14199118 ~ 14207892 (-) True AMCG00021315
AMCG00021313 mRNA upstream 74701 14212668 ~ 14219419 (-) True AMCG00021313
AMCG00021314 mRNA upstream 83001 14220968 ~ 14226208 (-) True AMCG00021314
AMCG00021318 mRNA upstream 116576 14254543 ~ 14312121 (-) True AMCG00021318
TU106219 other downstream 73757 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 207786 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 497907 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1324068 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1597960 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 2103037 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2509172 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2509172 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 3160913 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 3281637 17419604 ~ 17423418 (-) True G85953

Expression Profile