RNA id: AMCG00021316


Basic Information

Item Value
RNA id AMCG00021316
length 3734
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00021316
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14147920 ~ 14167490 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACGGGTcctgaaatatttgtttcccGGATGAAAGCGTTTCATTGGCTGATCGGCAGCCGAGAAGTTGCTGCAGCTGCCGGGAGATCATGGCAACCGTGAGGAGAGATAACAGAGTGACAGTTTCTCAGGGTTTCATCTGCGTCGGTTTTGCGGGCGTCTTCAGCAAAACCGCTACATCTCCATTAGACGTTGTCAAAATTTTAAGCCAGGTCGGGACGTTTCACAGCAAACAGGGCTTTGTGCATGCTTTCCGACTCGTCTGCAAGAATGAGGGTGTCCGAGCTCTCTGGAAGGGGAACCTGGTCTCCTGCCTGCGGCTGTTCCCCTACAGCGCCATACATCTGTCCACCTACAAGAGGATTGTCCACCTGCATATGGACGAGCTGGGCGGTATCCCTCAGTGGAGAGCCATTGCGGCAGGGGGGGCAGCTGGTATCGTGGCAGCCCTGGTGACGTACCCTGCAGAGGTGGTGGAAACCCGACTTATCGCACAGAACTGCAGGGAGCCCTCATACAGGGGCATTCTGCACACCCTCAGGACTGTGTACCGACAGGAAGGGCTGCGGGCGCTATATCGAGGGGCCTCTCTCACCATCATCGGTGCGATTCCATTTTCCATTGGCTGCTATGTAGTCTACATCAACTTGGATAAGCTGTGGCAAGAGCCCAGTTTCCGGTTCAGCCCTCTGCAGAACTTCATTAATGGCTGTGTAACAGCAGGGGTGGCTCAGACACTCTCCTTCCCATTCGAAACAgtgaagagaaaaatacagGCCCAGAGCCCCATCCTGCCTCACTTTGGTGGGGCTGACGTCCATTTCTGCGGAGTCGTGGACTGTTTTCGTCAGGTGATCAAATCTAAGGGCATCCTGAGCCTATGGAGCGGCCTAACTGCTAATCTTGTCAAGATCGTTCCTTATTTCGGTCTCCTGTTCAGTTCTTTTGAGTTGTGCAAGCAAGTGTGCCTGTACAAGAATGGCTACATCCTGTCTCCACTCAGCTACCAGTTGACTCCTGGAGTGGACCAGAGCCTGGGGCCCCATGAACTGCGCGAGGTGAAAAAGTACCTGAGAAACGGACACTTCACAGAGGACCAGCCTGCTTTGAGCAGCAGGTGGGTTACCGTTATCCAGCAATACTACCCGACTCAGGTAAAACTCCAGCGCACAATGGCCGACGCCGCTGTTTCATTCGCCAAGGACTTCTTGGCTGGTGGTATTGCTGCTGCCATTTCCAAAACAGCTGTAGCTCCTATCGAAAGAGTCAAGCTCCTTCTGCAGGTGCAGCATGCAAGCAAACAGATCACAGTAGACAAACAGTACAAAGGTATTGTCGACTGTGTGGTCCGTATCCCTAAGGAGCAGGGCTTCGTGTCCTTCTGGAGGGGTAACCTGGCCAATGTCATCAGGTACTTCCCCACGCAGGCCCTTAACTTCGCTTTCAAGGACAAGTACAAGAAGGTCTTCCTGGATGGTGTCGACAAGCGCACCCAGTTCTGGAGGTACTTCGCCGGTAACCTGGCATCTGGTGGTGCGGCCGGTGCCACTTCCCTGTGCTTCGTCTACCCCCTCGACTTTGCCAGAACCCGTCTTGCTGCCGATGTCGGCAAGGCCGGTGCCACCAGAGAGTTCAATGGTCTGGGTGACTGCTTGGTGAAGGTCTTCAGGTCTGACGGTCTGAAGGGTCTGTACCAGGGATTCAATGTCTCTGTCCAGGGCATCATCATCTACAGAGCTGCTTACTTCGGCATCTATGATACGGCTAAAGGTATGATGCCAGACCCCAAGAATACTCACATCTTTGTCAGCTGGATGATTGCTCAGACTGTGACAGCCGTGGCGGGTCTTACCTCCTACCCCTTCGACACCGTCCGTCGTCGTATGATGATGCAGTCTGGACGTAAAGGAGCTGACATCATGTACACTGGCACCATCGACTGCTGGAAGAAGATCCTCCGTGATGAGGGTGGCAAGGCCTTCTTCAAGGGAGCCTGGTCCAACGTGCTCCGAGGCATGGGTGGCGCCTTTGTGCTGGTCTTGTACGATGAGCTGAAGAAGGTCATCTAAACCTTTTAAAACCAACCTGTTGATGTTGTGAAATGGTGTTAAGTGTAACATATCTTGTACATTTCGGAAGGACTGTCATAAATTCCGCCTTATTTATAGGGACCAACTAGTACTTTACTACTAGTTgaactggggtggggggggaaggggaaaaaaaaaaagtttttattttatttttgttgctttttccccccccccctccctcaacAATGTCATTCCCATAATAAATAAACCGGGACTCAAAAGCTCTACTTGTTTCATCCAGCCGGtctgtttttaaacatgactttaataaaaacaacctaACGAATGAACCTATCCTTAGTCGTActgttggcttttgtttttcttctcattgtTGGTAGATGCTTGGCATACTTGTGAATTCCAAAATACAAACCTGAATcctatttaatttgattagcCACTTTTTCTCCCTGTAAATCCAAAACTGAATGGGGAACAcgtttgtagtttgtttttgggggggcagGTCaaagtcttttttatttttttggtccaGCTCTTGGACTAGTTGCTCACACAATGCAGGCTTTTAAAATCTTACTCCTAAAATGAGCTCTCTGAATAATCTTTTCATTGTGTTTAGTCCAGAAGTGTTAAGGTACAAAGGAGGATTTGATGAGGGAATCCACACTGCCTTCTGTGAAACGTTAATTGCAAAACTGCAGTGAGTAAATCCTGTCAACATGTGATTTAATTTAGCCTTGGCATGTTGTGCTTGCTGAAAGTCCAGCTGGTCTCCGGAATGTCACAGATCAGAAGTGAGAGCCAGATAGTGGTCCGTGATGAGTGTTGGGCTTGGGCCAAAACCAGCTGTGAGTAAACTTCGTCCAAATGATCAGGGCACTGCCCACCACAGGTGTCTGAGGTGGGTATGGTTAATGTGTGCTTGGGGAACACTTACAGAGGGTCCAGTTTTTGATGGTAAGCTATATTTTAAGTCACTGCCCCCTACTATGGGACTCTATtgtaaaaaaatctattcagcACCTGTTAACTGGAAATATAGTGAGCGAGTTTACGTCTGTGAATGGACGGAGCGGTGCCTGGTGCTAGGACACTGAAGGTTATTGATTCCCTGTTCAACATGTCCTTGCATGTTAATACCTGTTCCCCCAGAGTCAATGAGTGTTAGTttgtattttacactttttaggTTTTTGGGTTGTGGACTTTCTTAGAGCAGATGtccagctggtttcacagatcttGATTTAGCACTAGTTTTGGATGATGTGACCTAAAAAACATGGGGTGGTCAATGACTAGAGCTAATCTGAGGCTGTAAAGCCAGCCCTAATTCTTTTGGTTTCAGAGAGCTTAAGTATGCAAGCTGTGTGTGTCCTTGCTTGAATAACACTAGCTCTTAAGAGAGTGAAGCCTCATTGattgcaggtaaaatatacatttctgcagTCTTCTAAAGGAAGTCCTTTGGAGGAGAGTGGCAAAATCTTGTTTATGGATCTTGGCTGTTGCTGGATTGACATACTTGGTCAACAATGTCATCGGGTAATTTGTGGAATGTTAGAACTGGATGAAACTAAGACCTCATTTTAACTAGGTGCTATTGAAATTTACTTGAGGCTATCGCACATTGTTCTGAAAAGCTGATGCACAGTTTCTTcaataaactataaa

Function

GO: NA

KEGG:

id description
K05863 SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106215 lncRNA downstream 76595 14069343 ~ 14071325 (-) False AMCG00021304
TU106213 lncRNA downstream 76714 14057920 ~ 14071206 (-) True AMCG00021304
TU106403 lncRNA upstream 382102 14549592 ~ 14554392 (-) True G85251
TU106493 lncRNA upstream 873573 15041063 ~ 15043903 (-) True G85332
TU106657 lncRNA upstream 1151608 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 1213862 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 1263552 15431042 ~ 15432371 (-) True G85470
AMCG00021307 mRNA downstream 9953 14125654 ~ 14137967 (-) True AMCG00021307
AMCG00021308 mRNA downstream 23391 14118088 ~ 14124529 (-) True AMCG00021308
AMCG00021310 mRNA downstream 41061 14076265 ~ 14106859 (-) True AMCG00021310
AMCG00021309 mRNA downstream 72575 14074218 ~ 14075345 (-) True AMCG00021309
AMCG00021311 mRNA downstream 73959 14066606 ~ 14073961 (-) True AMCG00021311
AMCG00021315 mRNA upstream 31628 14199118 ~ 14207892 (-) True AMCG00021315
AMCG00021313 mRNA upstream 45178 14212668 ~ 14219419 (-) True AMCG00021313
AMCG00021314 mRNA upstream 53478 14220968 ~ 14226208 (-) True AMCG00021314
AMCG00021318 mRNA upstream 87053 14254543 ~ 14312121 (-) True AMCG00021318
AMCG00021319 mRNA upstream 173992 14341482 ~ 14378877 (-) True AMCG00021319
TU106219 other downstream 96023 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 230052 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 520173 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1346334 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1620226 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 2073514 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2479649 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2479649 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 3131390 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 3252114 17419604 ~ 17423418 (-) True G85953

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015594 False 1335 mRNA 0.50 4 NC_007125.7 32881625 ~ 32884138 (-)
grasscarp (Ctenopharyngodon idella) CI01000000_11600258_11602519.mRNA True 1447 mRNA 0.49 4 CI01000000 11599982 ~ 11602580 (-)