RNA id: AMCG00021320


Basic Information

Item Value
RNA id AMCG00021320
length 1582
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00021320
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14436780 ~ 14449385 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGCTGCCGTACAGACACCACAACCGTGGGACTCCATACCGGTAAACTGGGATTTCTGCTAAATGTACTCTTTCTTTCGCCTATCTGCTTACAGCAGGCACTGAGGGAATGGGCATGAATCAGAACAGCCTCTGTCGAAAATGCCTTCGTGGGGTCTACAGCTGCCATTGGAAACACCAAAAGCTAAGCATGCACAGGTGTGCATGCTGTTGGTTCTCTGTCCTGgcatttgtgtttctgctcACGGGGGGCTGGATATATGTGTGCTGGGCAGCCTTCAACGACCGGGATGAAGTCAACTGGGAAGCCTTCAGGTATCTGAAAAGATGGGTGAACTGGTTCATGGTGGTGGTGATTCTGTCCTCGGTGATGGTCAGTTACTGCTTCCTGTTGCTGGTGTTTGCACTGCTGCAGGTTGCACTGAGAGAAGCACTGGATTTGCACTGTATCCATAAGGTGCTGCTGTTTGCTGCTAGCCTGATCACTACTGCCTTGGTTGTTGGGATATGCATTAAATGGAAAGAAGAATGGGACACCGTTGTTATCTCACTGCGGCTGGGCGGCGTGGTGGCCGTGTCCCTCCTcggctgGGTGCTGATCTTCATGGCTTATGTAGTGGTGGTGGCTGGagtcttcctctctcctctcctgatCTCCTCACCCTGCATTGTGGAAGCACACCGGCTGCCCCCCAAACCTGCTCTGCTTGGACACCGAGGAGCCCCCGTGCTGGCTCCGGAGAATACCATGTTGTCATTCAAGAAGAGTCTGGAGTGTGGAGTGACCGCATTTGAGACAGACGTGATGCTTAGCCAGGATGAAAAGCCCTTCTTAATGCATGACAAGTCCCTCCTGAGGACTACAAATGTGATGGAGAGATTTCCAGAGCGGAAGAGCCAAATGGGCGACAACTACACATTGGAGGAGCTCAAAATGCTCAACGCTGGGGATTGGTTTCTCAAGAGTGATCCCTTCCACACAGTGTCCATGCTCTCGGAGGAGGACAGGAAGGCTATTCGAAATCAGACCATCCCATCACTCGAAGAGCTGCTGACACTGGCCAAAGAGTACAACACTTCCCTTATCTTTGACCTCAAGACCGACTCTACCAATGCAGTTTACACTGACCACGTTGTGCAGACGATTCTCAATTCCAGCATCTTGCAGAATCTGGTGCTCTGGTTGCCGCCACAGAACAGAGACCTAGTGATGAGAAAGGCCCCAGGGTTCAGACAGGTCTACGCTAATAGGTCAGAGATGGAGGCTGATGGTGGGAACCAGCTGAACCTCAAATACAGCTCTTTGACGACACAGGAGATTGGGGAGCTGCGGCAGAGGAACGTGTCGCTGAACCTATACGTGGTGAATGAGCCCTGGCTCTTCTCTCTGCTCTGGTGCTCTGGCGTCACCTCTGTCACGACCAATGCCTGTCACATCTTCAAGAACATGACGCAGCCTGTCTGGGTCCTTGCTCCTGATACGTACAGAGTGATCTGGATCACAGTGGACGTGGCATTCCTGCTTTCGATACTTGGTCTGTTCTTCCTGCAGAGatggCGATTTAACCGTGGACGTGATTTC

Function

GO: NA

KEGG:

id description
K01124 GDPD2; glycerophosphoinositol inositolphosphodiesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106215 lncRNA downstream 365455 14069343 ~ 14071325 (-) False AMCG00021304
TU106213 lncRNA downstream 365574 14057920 ~ 14071206 (-) True AMCG00021304
TU106403 lncRNA upstream 100207 14549592 ~ 14554392 (-) True G85251
TU106493 lncRNA upstream 591678 15041063 ~ 15043903 (-) True G85332
TU106657 lncRNA upstream 869713 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 931967 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 981657 15431042 ~ 15432371 (-) True G85470
AMCG00021321 mRNA downstream 4897 14409984 ~ 14431883 (-) True AMCG00021321
AMCG00021319 mRNA downstream 57903 14341482 ~ 14378877 (-) True AMCG00021319
AMCG00021318 mRNA downstream 124659 14254543 ~ 14312121 (-) True AMCG00021318
AMCG00021314 mRNA downstream 210572 14220968 ~ 14226208 (-) True AMCG00021314
AMCG00021313 mRNA downstream 217361 14212668 ~ 14219419 (-) True AMCG00021313
AMCG00021327 mRNA upstream 17824 14467209 ~ 14486022 (-) True AMCG00021327
AMCG00021325 mRNA upstream 44575 14493960 ~ 14500889 (-) True AMCG00021325
AMCG00021326 mRNA upstream 52284 14501669 ~ 14512268 (-) True AMCG00021326
AMCG00021328 mRNA upstream 66579 14515964 ~ 14522976 (-) True AMCG00021328
AMCG00021332 mRNA upstream 281173 14730558 ~ 14737743 (-) True AMCG00021332
TU106219 other downstream 384883 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 518912 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 809033 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1635194 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1909086 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 1791619 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2197754 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2197754 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 2849495 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2970219 17419604 ~ 17423418 (-) True G85953

Expression Profile