RNA id: AMCG00021321


Basic Information

Item Value
RNA id AMCG00021321
length 651
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00021321
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14409984 ~ 14431883 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGAAGCCGGTCTGGATTGATGCAGCTGAGCGGCGAGGTGCAGAGGCTGCTCCCAGGGAGAGATGATGCTCTGCACCGCACACCTCTGCTAGGGACAGATGGCCCTGAGTTTCCCCTGCTctgctgtgtgaatgtgtttgaCTGTGATCTCCGCTCCACAGACACCCAGAGAGCAGTGGACCTGCTGGAGCAGTACCAGACCAGTCTCACCAGCCCAGAGGAGCAGGGCTTGAGAACCAGTGTGGGGAAAGTCTCAGCCATCTTTGGCAGCCAGCTGTTCCAGGCTCTGCTGGatATCCAGGAGTGCTACGAAGTGACGCTGAGCCTGAACTCTGTGGCAAATGGACAACAGCCAGAAGAAAAGGAGTCAGACCAGGAGGAGAATgaggagAGATCAAACCCCGAGAGCCAGGATGGTGTGTTGCGGGTTCGAATCACAAGCAGGAGGAACTTTCAGAAGGTGGAGAGGGTGTCTGGCCTGGTGAGCCGCTCTCACATCGAGGTGCCCAAGGAGGTCATGTGCCCTGGGGTGCAGCGACTGTATAGCGGCCAGGAAGCCACAGCTGGTGTTGAGGCTCCGCCCTTTTTCTACCCACACCTGCACAGTTCCCCAGGTGCAGGATGGCTGGACAGCTCTGCAAATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106215 lncRNA downstream 338659 14069343 ~ 14071325 (-) False AMCG00021304
TU106213 lncRNA downstream 338778 14057920 ~ 14071206 (-) True AMCG00021304
TU106403 lncRNA upstream 117709 14549592 ~ 14554392 (-) True G85251
TU106493 lncRNA upstream 609180 15041063 ~ 15043903 (-) True G85332
TU106657 lncRNA upstream 887215 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 949469 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 999159 15431042 ~ 15432371 (-) True G85470
AMCG00021319 mRNA downstream 31107 14341482 ~ 14378877 (-) True AMCG00021319
AMCG00021318 mRNA downstream 97863 14254543 ~ 14312121 (-) True AMCG00021318
AMCG00021314 mRNA downstream 183776 14220968 ~ 14226208 (-) True AMCG00021314
AMCG00021313 mRNA downstream 190565 14212668 ~ 14219419 (-) True AMCG00021313
AMCG00021315 mRNA downstream 202092 14199118 ~ 14207892 (-) True AMCG00021315
AMCG00021320 mRNA upstream 4897 14436780 ~ 14449385 (-) True AMCG00021320
AMCG00021327 mRNA upstream 35326 14467209 ~ 14486022 (-) True AMCG00021327
AMCG00021325 mRNA upstream 62077 14493960 ~ 14500889 (-) True AMCG00021325
AMCG00021326 mRNA upstream 69786 14501669 ~ 14512268 (-) True AMCG00021326
AMCG00021328 mRNA upstream 84081 14515964 ~ 14522976 (-) True AMCG00021328
TU106219 other downstream 358087 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 492116 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 782237 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1608398 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1882290 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 1809121 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2215256 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2215256 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 2866997 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2987721 17419604 ~ 17423418 (-) True G85953

Expression Profile