RNA id: AMCG00021327


Basic Information

Item Value
RNA id AMCG00021327
length 4645
RNA type mRNA
GC content 0.50
exon number 25
gene id AMCG00021327
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14467209 ~ 14486022 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAAGTCTTCCCCAGTTAATCACACTAGAAGAGGTTTACTACACTTAAGTCCAAGGCCATGAGAGGCGCTCCATGACACGttaaagCTCTCACATTTCCAAGATGTCAGAACCCAATGAAAGTGAGATTATTCCCCCTATACCCAAGCCTCGTGCCCGGTACACTGCCTCAGTGGGGTTTAATACATCGCCTGTCCCTACTCCTGCTCCCAGAAGGTACAGGAGATCAAAAAGTACTTCTGATGCACTAGAGGAACCAGAGGAAAACAATTTCACTGTCGATGCAGCCCAAACTACCTCTTGGAATTTGGATTTTCTGGGAAAGAcggacaaacaaaaacaccaacaaatTCTGAATGGATACTGTAATTCTGAGCCGATCAGCAGCCCGGTCATACTAGAATCTCCACCGGACCCCAGAACTGACCTTTCTCCAGGAGCTCAAGACCAACACGATGTAGATGTCCCTCCAGGAGTTCCACAAAAGGTTCTCTGTCCTGATCTGTCAGCGTCAGGTCCAATGGAGGCCGAAATCAAATGCACTGCTGATTCCAGCTCTGACACATCAAGCGAAGAGGAACCTCTCCTTATGACAGCTTCCTCAGATTCTGAAGACAAGCTGGAACAAGACGTGGATGACGGAACAGAAACTGCACCAAGTACGGATGAATCAAGGCGATCAGAGCCCCTCCCACACTGGGGCAACTCTCCAAGTGCTCCCTGCGTGGACAGCCTTGCTGCAATGTCTGAAGACCAACAGAGACCCCCCGGTGGTGAAACTCTCTCTGAAACTCCAAAGACAAACACAGGAGTCAACATGGCACATGCTGAGCAACGCCAGAATATGAAAAGTGAGACTTCAGTGAGTTCTGTTCTGCCGTCGCAGAGATCTGAAAGGGAGGGATCTGGAGCTCAGGAGTGTGTCTCTAGCAAGGGGCAGAGCAGGACAGAGCAGTCAGCCCTAGAGTCCAGACCAAAGAAACTAAAGGCACCACGTGTCGCCACCATCCGCGTGAGCAGGAAAAAACAGGCCCTGGTGGAGTGGCAGACGAAAGGGGCATCGAGCAACACGGGGGTCCGAGACAGCGCAGTGTCCCGCTCCAACTGGCTGGACGTGTGGAAGGGCAAGAGGCACTATGTGCTGTGGGTGACTCTGGATGGAAAGCTTTTATCTTTGTGGAAGAAACGCACTGACAAGTTCACTGAGATTGTAATCCACGTGTCAAACATTACGAATGTCCAGACACTAGAGGGATCCAGATTCACAGTTTCCTCCCAAAAGAAGCACTTTGAGTTCTTGGCAAATAATGATGttGTGCGGGATGGTTGGGTGAGCTCCCTGCATGCCTCCCTGGGGCAGGACCCCCCAGAGCCCCCAAAGCAGCAGGGCCCCCTCACCATGAAGGACCCCCGGACCAAGGTGTATGCAGCCATCTGTGGACATGACCTGTGGATTTTCCGCAACAAAGAGGACTTTGGTTATGGAGTGGGCATTACCTTCATCTCCATGAATGTGGCACAGGTGAAGCAGACTGGCCGGCATGGCTTCTCTCTCATCACCCCCTACAAGACATTCAGTTTCTCAGCCGACTCCTCCCGGGATCTCACGGTGTGGCTGGCCTGTCTGACGCAGGTGATCCGCAATGCCCTGTCCTGCAGTGAGATCGCCCAGCGTGTGTGGGCCAGCCCCTGGAATAATGTGTGTGCTGAATGTGGCCTTGCCAAGCCTGAATGGGCTTCTGTCAACCTGCTGGTTGTCATCTGTGATGCCTGCGCTGGTCAGCACCGCTCCATGGGGACCAATGTGTCCAAGGTGCGCAGTCTGAAGATGGATAGGAAAGTGTGGACGGAGCCTCTCATTCAGCTTTTTGTCCTGTACGGGAATAAAGCTTCCAATGAGGTGTGGGGCTGCAACGTGCCTGCGGCTGAGCAGATCTTAGGGGATGCCTCCCCAAATGAGCGTCGCATTTACATTATGGCCAAATACATCAAGGGGCGCTACCGCCGGGCACACCCACTTGCCTCCAGCCAGAAGCTACTCAACCAGCGTCTGTGTGAAGTGGTCACTGGCCCTGACATCTCGGAGACAATGTCCTTGCTGTGCTCAGGGGCGCAAGTCACGTGCGTCCCGGCGGACCCCACCTGTCCTTCGCCCATCTCCCTGGCAGAGCGGGCGGGGCAGGCCATGCAGACCGAGCTGCTCCGACACAACGAGTTCACAGAGGCCCCAGCCTTCGATCCCAAACTGAACGAGAAAGAACAGCCACCCAGTGCTGAGCCCACTGACCACCCTGCCTCTAAAGGAGAGGAAGAGCTCCATGGTAAACTGGAGGAGGACCGCTTCCTGTTCTCAGAGCAGAATGACTCTGCAGCCTATGATGTCCTGGACCTGAGAGAGGTCATCTCCATCTTTGACTGCTCTTCTGGGTGGAACAAGGGGTGGGGCAAAGAGGCTATTGCGAAGGTGCTGCTGCCATGTGCTTTGCCAGACCTGGAGCTGGAGGGTGTACAGGCACTGTCACGAGTGTCCCTCAGGGAGGGGGGCaagctggagcacaaggacgtTTGGGCAATGCTCAGACATGACAAACTTCTGCTGTACCCCACCAAGGGGggccagggagacagggtgTTGCTGACAACATCAATGACTTGCAACTTGGGGTCTTCTGAAAACACCATTGAAGTAGTTACAGCAGACAGGTTTCTGTCATTGCAGTTTGAGCAGGAACGGTCCTGCCAGTGCTGGAACGTGCTGCTGAAGATGGCAGTGTGCTCTGCGGAGAAGAAACAGGTCGTGTACCCCAGTGCTTGTGACGGGAATGTGCCCACAGCCATCGAGAGGTGCATCTCTCACATCACACAGCACGgtCTAACTGTGGATGGTATTTACCGGCGCTGTGGCATGGTCCCCAAGGTCGCACGGCTGGTGGAGGAGCTCAGCAAGGACCCCCACAAGGTGCAATTTGAGCCAGGGGAGATAGGGATCTTGGAAACAGCAGGAGCCCTCAAAAGGTGTCTCCGCCAGCAGTCTGCCCTCATCCCCGAGTCTCACATCCCATCCTGGGTCCAGGCAGCAGCTAACCCTGTGGAGACAGTGAGAATGACAGCCTATCGGAGGGCTCTGGACCAGCTGCCAGCTGACCAGAGAGCCCTCCTCAGGGCCCTTTTCGGACACCTTTACCAAGTCCAGTTGTACAGTCATGTGAACCGGATGACAGCGCAAAACCTGGCTCTGGTGTTTGTGCCCACTCTGTTCCAGGACCTCGCCATGAGCACAGACATGGTGCGTCTAACCCGCGAACTCATCATCCACTACACACTGATCTTCCAGGGACTAACAGGTAGCCGGCATCCTGGGACTGGAGTGGTCAACCAAGTCTATACAAGACTATGAACTCACTAAGGGAGTTGAGTAGGTGGAAATTGATTTGGTGACTGTCTTCTGAGCCATGGACAAGCACAGAGCAATTGACTAAGCAGTGAGAGCCTGAGGGAGACTGAAGAATTGTGATCAACGGGATCATCCTtttccctctgtccctctgttaCGTTTAGAAAAGTTTTTTGTGATCCTAGACTTGGGGGTAGAGGACATGATCTGCACCACGGTGGAAATGGATCTGAATTTCTTCAACATTGTTCCCTCccgaattgtttttttttttttttttaattttttaatttgcattttacaaacTTCCTTTCTTTCACCACCCTTGGACAAAAGTACTGCTGAATTGTCATGGAGCACCACCCACTGAAGCACCCATCAGCCCTGCAGTTAAGCCACACCtgccaacaataataaacaagcCCTATAAAGAAACACCACCCTCTCTGCCGCCTGGCATTTTACCTGAGGAGAAGTTCAGGTGGGCATTGGGAGTGCATTCGAGCAGAGCGACCCGTGAGTGCTCTCAATTTGTCCTGTGCTCTCGAACAGGATACTGACCTTTGTTGGTACTGAGAACCCAATTTGGCTACTGACCTGGACTGGAAAATGACCATTACTTATCACGATCACTGCGTCCAAATCACAACTACAAGATGGCTTTGTGAATTGgatatttgtttgattgttttatttggaaaacCAAGTAATGGCCCGAACGCAGCCAGGGGCACAGAAATGGTGTTAGTGAGCATCCAGCTCCAGGCCAGggtttctttttccattttaagtcTTTTAAAAGCTCATTTTCAGATCCAGCACTGCAAGatctatatatgttttattatttttaattacatatacatttaaagctAAAGTTGTCATAAATGTttacatgaaaatgtttaaGGTATAATTCTTACTTGAGCCAGTTTATGTTCACAAATGTGATCAGTTAccaacaaatatacaaaatcctttttttcagAAACTCCAGAGATTAAGAGGGATTAACTGAACAGAACTACTTTTTCACTGTAAAGCATGTTCCACAAAGTGAATGTGGCTGTATCATAAAACTTACAGGAAATAGAGCCTGTTGCAAAACACCCTCTCTGACTATACACTATTCAGATAATAAAGAATGAGCTGGATTCATTGAAAAGTATGAtggtatattaaaatatgctgTGTGATTAATTTGCTGTATTACAGTTCCTGTCTTAATAAAACAGTGACTTGGTTTCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106215 lncRNA downstream 395884 14069343 ~ 14071325 (-) False AMCG00021304
TU106213 lncRNA downstream 396003 14057920 ~ 14071206 (-) True AMCG00021304
TU106403 lncRNA upstream 63570 14549592 ~ 14554392 (-) True G85251
TU106493 lncRNA upstream 555041 15041063 ~ 15043903 (-) True G85332
TU106657 lncRNA upstream 833076 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 895330 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 945020 15431042 ~ 15432371 (-) True G85470
AMCG00021320 mRNA downstream 17824 14436780 ~ 14449385 (-) True AMCG00021320
AMCG00021321 mRNA downstream 35326 14409984 ~ 14431883 (-) True AMCG00021321
AMCG00021319 mRNA downstream 88332 14341482 ~ 14378877 (-) True AMCG00021319
AMCG00021318 mRNA downstream 155088 14254543 ~ 14312121 (-) True AMCG00021318
AMCG00021314 mRNA downstream 241001 14220968 ~ 14226208 (-) True AMCG00021314
AMCG00021325 mRNA upstream 7938 14493960 ~ 14500889 (-) True AMCG00021325
AMCG00021326 mRNA upstream 15647 14501669 ~ 14512268 (-) True AMCG00021326
AMCG00021328 mRNA upstream 29942 14515964 ~ 14522976 (-) True AMCG00021328
AMCG00021332 mRNA upstream 244536 14730558 ~ 14737743 (-) True AMCG00021332
AMCG00021336 mRNA upstream 537986 15024008 ~ 15028310 (-) True AMCG00021336
TU106219 other downstream 415312 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 549341 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 839462 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1665623 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1939515 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 1754982 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2161117 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2161117 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 2812858 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2933582 17419604 ~ 17423418 (-) True G85953

Expression Profile