RNA id: AMCG00021328


Basic Information

Item Value
RNA id AMCG00021328
length 1023
RNA type mRNA
GC content 0.52
exon number 14
gene id AMCG00021328
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14515964 ~ 14522976 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGCAAAGGTCTTTAAGAAAACTAGCCCCAATGGCAAGCTCTCCCTATACCTGGGGAAGAGAGATTACGTGGACCATATTGACAATGTGGATTCAGTGGCCTATGTAGTGATGGCCTGTGCTTTCCGCTATGGACGAGATGACCTTGATGTGATCGGGCTGTCATTCAGGAAGGACATCTACTTGGCAACCATACAGGTGTTCCCCCCTGAGGCTGGAGAGAAGCCCCCTAACACCCACATGCAGAACCAGCTTCTGAAGAAACTGGGTCCGAATGCCCATGCCTTCCATTTTAAGaTTCCCACCAACCTGCCCTGCTCTGTCACCCTGCAGCCTGGGCCTGATGATGTTGGCAAGGCCTGTGGGGTCGACTTTGAGGTTAAGGGATTCTGCGCAGAGAACCTGGAAGAGAAAATCCACAAGAGGAACTCTGTGCGGTTGATCATCCGCAAGGTGCAGTTTGCGCCTGTTAACACCGGCACAGTCCTCAAGGCTGACACAACCAGGCAGTTCATGATGTCCGACAAGCCCCTGCGTCTGGAGGCTTCTATGACCAAAGAGCTCACAGATGTGGTGCTGTACTCTTTGGATAAATACACCAAGATTGTGCTCAATGAGGAGTTTGCGGATACTGTGAATGGGAACTCCACCTTTGAAAAGACATACAATGTCACCCCCTTACTCACTAACAACCGAGAGAAGCGTGGCCTGGCGCTGGATGGCAAGCTGAAGCACGAAGATACCAACCTAGCTTCCACTACCCTgctgcgGCCAGGGTTGGATAAGGAAGTTCTTGGAATCCTGGTCTCCTACAAATTGAAGGTCAACCTCATGGTGTCCCGGGGAGGCATCTTGGGAGACCTTACAGCCAGtgATGTTGGTGTGGAGTTGCCCTTAACTCTGATGCACCCCAAACCCGTTGAACCTGTTAGtCAAGAGGATATTGTGATCGAGGAGTTCGCCCGGCAGAAGCTGAAGGGGGAGAAGGATgatgaggaggaacaggaggaaaAGGAATAG

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106215 lncRNA downstream 444639 14069343 ~ 14071325 (-) False AMCG00021304
TU106213 lncRNA downstream 444758 14057920 ~ 14071206 (-) True AMCG00021304
TU106403 lncRNA upstream 26616 14549592 ~ 14554392 (-) True G85251
TU106493 lncRNA upstream 518087 15041063 ~ 15043903 (-) True G85332
TU106657 lncRNA upstream 796122 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 858376 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 908066 15431042 ~ 15432371 (-) True G85470
AMCG00021326 mRNA downstream 3696 14501669 ~ 14512268 (-) True AMCG00021326
AMCG00021325 mRNA downstream 15075 14493960 ~ 14500889 (-) True AMCG00021325
AMCG00021327 mRNA downstream 29942 14467209 ~ 14486022 (-) True AMCG00021327
AMCG00021320 mRNA downstream 66579 14436780 ~ 14449385 (-) True AMCG00021320
AMCG00021321 mRNA downstream 84081 14409984 ~ 14431883 (-) True AMCG00021321
AMCG00021332 mRNA upstream 207582 14730558 ~ 14737743 (-) True AMCG00021332
AMCG00021336 mRNA upstream 501032 15024008 ~ 15028310 (-) True AMCG00021336
AMCG00021338 mRNA upstream 606489 15129465 ~ 15147275 (-) True AMCG00021338
AMCG00021341 mRNA upstream 679195 15202171 ~ 15206402 (-) True AMCG00021341
AMCG00021345 mRNA upstream 712733 15235709 ~ 15244700 (-) True AMCG00021345
TU106219 other downstream 464067 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 598096 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 888217 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1714378 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1988270 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 1718028 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2124163 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2124163 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 2775904 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2896628 17419604 ~ 17423418 (-) True G85953

Expression Profile