RNA id: AMCG00021341


Basic Information

Item Value
RNA id AMCG00021341
length 726
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00021341
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15202171 ~ 15206402 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCAACACCTACAACACCACCCTGCCGCCACCAATACCGCCCAGACAGGGCACCCGTGGAAATTCTACATTGTCCACTCAGCCACTCATGTGGTTCTTGCTGGGCTTGATTTTGGTCCACATGGCTGCGTCGGTCTTCCAGGACCTAATAAACGTGCGTGATGAGTACATAGTGCTGAAGAAGCTCCAGCAGTGTGAAGAGCAGTCCCAGGACAAGGAATCAGTGTTGAACTGTGGGAAACTTGTGTCCAAATTCCAGAATGTGATAAAGGTACAGATATGTTGTAACACACCATACAGCAGACCCACACCTGTGGCACATCTCAGAATTAAAGGGCCCACCAAGGCTGTTTCTGGAAGTAAAATCAACCAGTGGGCAGAGACTCAATCACTACTAAGAGACGTGAGCTATGATTCTCACAGCGGCCAGATATCAGTCCGTCATACTGGATTATACTACATCTACTCACAGATAACCTTCTCAAAGACACAAGAGAAAGCCCCCATTTCCCAGAATATAAAGACAGAAATTTCTGGAAAGGAAACCACGTTGCTAACAGCCTACAGCACCGTGCATAGCAGTGACCCACCTAAGTACACTGTATACCAGGGCGGGGTGTTTGAACTACAGAAGGGTCAAAAGCTCTATGTGACAGTGACAAACTTAAGTCTGGTGAGCTTCAATGAAAATTCAACTGCATTTGGATTATATATGCTTTCCTAA

Function

GO: NA

KEGG:

id description
K03161 TNFSF5, CD40L, CD154; tumor necrosis factor ligand superfamily member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106493 lncRNA downstream 158268 15041063 ~ 15043903 (-) True G85332
TU106403 lncRNA downstream 647779 14549592 ~ 14554392 (-) True G85251
TU106215 lncRNA downstream 1130846 14069343 ~ 14071325 (-) False AMCG00021304
TU106657 lncRNA upstream 112696 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 174950 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 224640 15431042 ~ 15432371 (-) True G85470
TU106714 lncRNA upstream 367224 15573626 ~ 15575997 (-) True G85498
TU106753 lncRNA upstream 544149 15750551 ~ 15755446 (-) False G85530
AMCG00021338 mRNA downstream 54896 15129465 ~ 15147275 (-) True AMCG00021338
AMCG00021336 mRNA downstream 173861 15024008 ~ 15028310 (-) True AMCG00021336
AMCG00021332 mRNA downstream 464428 14730558 ~ 14737743 (-) True AMCG00021332
AMCG00021328 mRNA downstream 679195 14515964 ~ 14522976 (-) True AMCG00021328
AMCG00021326 mRNA downstream 689903 14501669 ~ 14512268 (-) True AMCG00021326
AMCG00021345 mRNA upstream 29307 15235709 ~ 15244700 (-) True AMCG00021345
AMCG00021342 mRNA upstream 54520 15260922 ~ 15263404 (-) True AMCG00021342
AMCG00021344 mRNA upstream 60638 15267040 ~ 15277340 (-) True AMCG00021344
AMCG00021343 mRNA upstream 73947 15280349 ~ 15282889 (-) True AMCG00021343
AMCG00021347 mRNA upstream 80823 15287225 ~ 15304732 (-) True AMCG00021347
TU106219 other downstream 1150274 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 1284303 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 1574424 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 2400585 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 2674477 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 1034602 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 1440737 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 1440737 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 2092478 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2213202 17419604 ~ 17423418 (-) True G85953

Expression Profile