RNA id: AMCG00021342


Basic Information

Item Value
RNA id AMCG00021342
length 657
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00021342
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15260922 ~ 15263404 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAGAAGCACCCGTCGCCCAGAGTGCTCCAGACTGGGAAGGCTGGGGAGCAGTCCAACTGCGTCCTCTTCACTTACTTCCAGGGAGACATTAACAGTGTGGTGGACGAGCACTTCTCCAGGGCGCTCAACAAGGCGAACAAGCCCAAGGACCTCAGCACCAAGAGCAAGAGCAGCAGGACCGTACAAAAGATCGaTGAGCCCTCTGTGCCTGTGCAGTGGAATTTACCCCCTCCCTCCTGGTCCGAGACTGCCTTCCCTGCAACCCCCAGCCGGATCCAGTTTGCAGCTGCGGAGGACCACCACTCAGTCCCGGGGGTGCTAAGCAGTCCCCCCGGCCAGCTGCCAACACTCTGGCCCTTTCCCTCACGGCATGGCGGTGGGTTTGGGCTGCCCCCGATTGTGTACCCTCCGTCCGTGTCCCCCGAGGCTCCCGTGGGCGTGGCTGAGCGCCAGTACACCAACTCCTTCCTCAACCTCCTGCACAGCGAGCGGCCATCGGGCAGCACGGGCCTGAGCTCGGTCCCCAAGCCTGACCTCAACCCTGGCTGGTCCAGCACCCCGCCTGCTGACTTCAGGGATGTGGGAAGGGGCATCAGCCTTGACTCAGgaATACCCGCTCCAGAAAAGAAGAAGGACCTGTACTGGTATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106493 lncRNA downstream 217019 15041063 ~ 15043903 (-) True G85332
TU106403 lncRNA downstream 706530 14549592 ~ 14554392 (-) True G85251
TU106215 lncRNA downstream 1189597 14069343 ~ 14071325 (-) False AMCG00021304
TU106657 lncRNA upstream 55694 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 117948 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 167638 15431042 ~ 15432371 (-) True G85470
TU106714 lncRNA upstream 310222 15573626 ~ 15575997 (-) True G85498
TU106753 lncRNA upstream 487147 15750551 ~ 15755446 (-) False G85530
AMCG00021345 mRNA downstream 16222 15235709 ~ 15244700 (-) True AMCG00021345
AMCG00021341 mRNA downstream 54520 15202171 ~ 15206402 (-) True AMCG00021341
AMCG00021338 mRNA downstream 113647 15129465 ~ 15147275 (-) True AMCG00021338
AMCG00021336 mRNA downstream 232612 15024008 ~ 15028310 (-) True AMCG00021336
AMCG00021332 mRNA downstream 523179 14730558 ~ 14737743 (-) True AMCG00021332
AMCG00021344 mRNA upstream 3636 15267040 ~ 15277340 (-) True AMCG00021344
AMCG00021343 mRNA upstream 16945 15280349 ~ 15282889 (-) True AMCG00021343
AMCG00021347 mRNA upstream 23821 15287225 ~ 15304732 (-) True AMCG00021347
AMCG00021353 mRNA upstream 120699 15384103 ~ 15387522 (-) True AMCG00021353
AMCG00021351 mRNA upstream 144480 15407884 ~ 15426650 (-) True AMCG00021351
TU106219 other downstream 1209025 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 1343054 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 1633175 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 2459336 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 2733228 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 977600 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 1383735 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 1383735 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 2035476 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2156200 17419604 ~ 17423418 (-) True G85953

Expression Profile