RNA id: AMCG00021345


Basic Information

Item Value
RNA id AMCG00021345
length 693
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00021345
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15235709 ~ 15244700 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCGTCCTTCGCTGGAGTCTCAATTTCAGCACGTCGGACAGCACCAATGTGAGCTCCCGGGACCCCCTGCCCGCCGAGGACCCGTCCGACCTGACCCGGGCCGGGCACACGGTGGTAGCGGTATTCCTCGGTCTGATCTTCGTGTTTGGGTTTCTCAACAACCTCGTAGTGCTGCTCATCTTCGCCAAGTTCCAGCCGATCCGGACCCCCATCAACCTGATCTTGCTGAACATCAGCGTGAGCGACATGCTCGTCTGCATATTTGGGACTCCCTTCAGTTTCGCCGCCAGCCTGCACGGGAGATGGCTCATAGGGTGGGCTGTGATTGACCCAGACAATGTAGGCAGATTGCCCCAGAGAGGCATCGTGTCCCTGGTGTCCCTGTCCATCCTGTCGTACGAGCGCTACGTCACTGTGCTACGCTCCACCAAGGCCGATGTGTCCGACTACAGGAAGGCCTGGCTGTGCATCGCCGGCTCCTGGCTGTACTCCCTGATATGGACGCTTCCTCCCTTCCTGGGTTGGAGCAGCTATGGCCCCGAGGGCCCCGGGACCACTTGCTCCGTACAGTGGCACCAGCGCTCCCTCAACAGCATCTCCTATGTGGTCTGCCTCTTCATCTTCTGCCTGCTGCTGCCTCTTGTGCTCATGGTCTTCTGCTACAGCAAGATCTTCTTTGCCATCCGAGGG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106493 lncRNA downstream 191806 15041063 ~ 15043903 (-) True G85332
TU106403 lncRNA downstream 681317 14549592 ~ 14554392 (-) True G85251
TU106215 lncRNA downstream 1164384 14069343 ~ 14071325 (-) False AMCG00021304
TU106657 lncRNA upstream 74398 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 136652 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 186342 15431042 ~ 15432371 (-) True G85470
TU106714 lncRNA upstream 328926 15573626 ~ 15575997 (-) True G85498
TU106753 lncRNA upstream 505851 15750551 ~ 15755446 (-) False G85530
AMCG00021341 mRNA downstream 29307 15202171 ~ 15206402 (-) True AMCG00021341
AMCG00021338 mRNA downstream 88434 15129465 ~ 15147275 (-) True AMCG00021338
AMCG00021336 mRNA downstream 207399 15024008 ~ 15028310 (-) True AMCG00021336
AMCG00021332 mRNA downstream 497966 14730558 ~ 14737743 (-) True AMCG00021332
AMCG00021328 mRNA downstream 712733 14515964 ~ 14522976 (-) True AMCG00021328
AMCG00021342 mRNA upstream 16222 15260922 ~ 15263404 (-) True AMCG00021342
AMCG00021344 mRNA upstream 22340 15267040 ~ 15277340 (-) True AMCG00021344
AMCG00021343 mRNA upstream 35649 15280349 ~ 15282889 (-) True AMCG00021343
AMCG00021347 mRNA upstream 42525 15287225 ~ 15304732 (-) True AMCG00021347
AMCG00021353 mRNA upstream 139403 15384103 ~ 15387522 (-) True AMCG00021353
TU106219 other downstream 1183812 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 1317841 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 1607962 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 2434123 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 2708015 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 996304 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 1402439 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 1402439 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 2054180 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2174904 17419604 ~ 17423418 (-) True G85953

Expression Profile