RNA id: AMCG00021347


Basic Information

Item Value
RNA id AMCG00021347
length 3404
RNA type mRNA
GC content 0.52
exon number 22
gene id AMCG00021347
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15287225 ~ 15304732 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTACATCAAGCTTACAGGGGATGAAGGTGCTTTTCCAGGGCCAGCAGTGTCAATACTGGGAGCTTAAGCAGGGTAGAATGGTACCCCCACTGGAGCAGCTCACAGTTTGCGTGGACCTATGCCGTCAGACCAACACCAAGAAGTGGACTGCCTTCACCTACAACCGGGTCGACCAGCCCACCCAGAATACGCCGGAGCTGGGGCTGGCTGGGTATGAGGACAAGCTGCAGGTGTGGCTGTTTGGCGAATCCTTTAATGCTTCGGTGGAGCTCAGCCTCTGGAGCTGGAACAGCATCTGCTTCACCTGGTCCAGCAAAACCAAGCAGCTGGTTCTGTATGTGAACGGAAGCAGTGTGTTCAACACCACCCTCACAGGGCCCCGTCACCTGGCACCCAATGGGACCCTGACTCTAGGGGCGGCTCATGAGATCAGCAACGGCCAGGTGCATATAAAGACAGCCAACAACTTCTTGGGGGAACTGTACTTTTTCCGCATGTGGAAGGAAGAGCGCAGTGCCCATGAGCTCTCTGAGGACCGCTGTAACAACGGCAGTGTGATCCAGTGGCACTCCGACAACTGGAACACCCATAGCTGCAACCTAGAACCCGACACCAAACTTCAATGTGACATCAGTCACTATAAAATTGAAATGATCATTATTGTCATCACACGAGACACTGGGCCTCTTAATGCCAGCCTTGCCAAGACATTTGTCAAGGAATggctCAACAGTACCTTCCAACCAAACATCACTGTGCACAATGTCAGTTTGTCTCCCATACCACCCACATTTTTCTCCATCGTCTTCATCAATGTGACATGGAGCCTAGACTTCAGGGATACAGAGAAACAGATCATAGAACTGCTCAGCAGAAACTACACCTCTGAGAATCGCTCTATGCAGATGTACACGGAAAACGTCAACATCACACTCCTCGACAAGATTCCTGTGCCCACACCCTTTCCTGTGACCCAAGTTACAGGGGTGACGCCAGTCTCTGCTACAACTCAAGACGCTACCGGAATCGCCACCGTCTCAGCACAGTCCAGGCATGGCACCCACAGAGCCACAAGTATACAACACTTATTCCCCACCCCCATCTTCCAACAGTCCGATGACTACGACCTGTTCCAATATCAGTCTCCACATTGCCATGGCAGCGTCATCAACTACAGCACGCAGGGGAGGCTAAAGCTGTACCATGGCACTATACTCTGCTTCCAATTGCTCTGCTTGGAAGCCCCCCCGCCGACTGTCCTGAATACATATAGCAATGTCCACTTAATTCTGGAACAGTGCATCAATCTCCAGATCAGGGGTCTCGGGTCCTTCGAGTCACTCAGTGACCGCAACTCCCTCCACAACGATCAAAACCACATCGCCAGGAACGAACAGCACCCCTACAGCTGTCCCACTAAGTTCCAGATGATGGTGAAGTCTTCAGAAAACAACAACGACACAATGAGACAGATTGAGCAGTACTTGCAGaaggaatataataataatttcacagcTGTGGAAGCAGAAAACAGTAGCATAGAAATTGTTCTGATAAaTCCAGGGAACTGCCCCAAACAGAGTCAGTTCACCCCCCAGGGTAGCTACCTGTGGCCAGAGACCGAAGTGCAGAACCTCGCCACACAGCACTGTGAAGGTGATGCCATGAAAAATGCCACAAGGAACTGCGTGGTGAATGCAAAGTCTAACCAGGCACAATGGAAGCACCCTGACCTGCTGTCCTGCCCTACGCTGCTCAGCACCATCCCATCTCTCAACAACATCACCGTCACAGCCAACAACTCTCAGGACCTGGCAGAACTGATCAAAAACATGACCAGCAATCAAGGCATAAGTTCTCATGAAGATCTGATCATCGTTGTCTTCAAACTGTTGGAGATTGTGAAGATAGGGATTTTGACACCACCTCTGGGCCAGACGATCATCGACATCATCAATAACATCCTCGAGACTAACATCGACCTGCAGCCCGTCACCAACGACATCCTAGAGGTCACAGACACCCTCGGGAACAAGCTCATCTTTGACGGCATGTCCCTCAACGTGTCCTCCCCCATGCTGGCTCTTTCCATCTTGAACGTGGATCCCACTGATTTCAACGGCATGGCGTTTGGGGTGTCCTCGTTCTCTGAAGGCATCAATCCAGAGattttcataAACCAAGAGCCTTTTGACAACATGGTGGCATTCATCTCCCTCCCACCCTCCCTGCAAATCCATTTACCTGTCAACCCGGAGACAGGGCATTCCCGAGTGCAGTTCCAGTTCTATGGGAAACAGGAACTCTTCCAGGATCCTGCGAATGTCAATCTGTCCACCTATGTAGTGGCTGCCAGTGTTACCAACGCCACCATCAGGAACTTAAAAGACCCCATTACTGTGACTCTGCGCCACCTGAAGCCCAACATCgATAATCATGAGGTGGAGTGTGTATACTGGGATTTAGGACAGAACGGTGGAAAGGGAGGGTGGAGCTCCGAGGGCTGTGAAAAGAAGAGCACCACTGTGAACCACACCACCTGCTTCTGTTACCACCTGACGCACTTTGGCGTGCTGCTCGACCCCTTCAGGACTCCCTTGGATGCCCAAGACAACCGCATCCTCACCCTCATCACCTATGTGGGCTGCGGCCTGTCATCTGTTTTCCTGGGCATCAGTCTGCTGACGTACACAGCCTTTGAGAAACTGCGGAGGGACTACCCTTCCAAGATCCTGATGAATCTCTCCGCTGCCCTGCTGGGGATGAATATGTATGAGCCTCAGTGGTGTGTTGTCATCCATCTCAGCTGCTGGGTGCAGGATGGTGTGACGTTCTACGTGTCAGTGGTGGCCTTCTTCCTGCTAATCCTACTGTGCAATGTGTCGGTGTTCATCGTGGTGCTGGTCCAGATCCGCAACATGAAGGCCAAGAAGCCAGTGGGCAGCCACAGCGGTGTCCTGTACAACCTGAGGAGCGTCGCCAGCCTCACCTTCCTGCTGGGACTCACCTGGGGCCTGGCCTTTCTCGCCTTTGGGCCTGCCAAGTTGGCCCTGCTCTACTTGTTCTCCATCTTCAACAGCCTGCAGGGCTTCTTCATCTTTCTGTTCCACTGTCTGATGAAGGAGAACGTGAGGAAGCAGTGGAGGATCCATCTGTGCTGCGGCCGATTCCGACTCAATGAGCATTCAGACTGGAGCCGATCTGGTACCATAGGCAAATCCAGAGTAAAGCAGCTGGTCCACACTCCCTCTGTAAAGTCGGCCAAGTCAGACAACTCCAACTCCACCAGCAGCACCTCCAATGAGTCAGACTCTGGGAGACAACTGGTCTCCAGCCTGGCTCACATCAGCCCCTCCTTCCCCAGTGCACTGGCAGCTGTGCCCAGAGACATGGAAATGAACTAC

Function

GO: NA

KEGG:

id description
K08455 ADGRG4, GPR112; adhesion G-protein coupled receptor G4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106493 lncRNA downstream 243322 15041063 ~ 15043903 (-) True G85332
TU106403 lncRNA downstream 732833 14549592 ~ 14554392 (-) True G85251
TU106215 lncRNA downstream 1215900 14069343 ~ 14071325 (-) False AMCG00021304
TU106657 lncRNA upstream 14366 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 76620 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 126310 15431042 ~ 15432371 (-) True G85470
TU106714 lncRNA upstream 268894 15573626 ~ 15575997 (-) True G85498
TU106753 lncRNA upstream 445819 15750551 ~ 15755446 (-) False G85530
AMCG00021343 mRNA downstream 4336 15280349 ~ 15282889 (-) True AMCG00021343
AMCG00021344 mRNA downstream 9885 15267040 ~ 15277340 (-) True AMCG00021344
AMCG00021342 mRNA downstream 23821 15260922 ~ 15263404 (-) True AMCG00021342
AMCG00021345 mRNA downstream 42525 15235709 ~ 15244700 (-) True AMCG00021345
AMCG00021341 mRNA downstream 80823 15202171 ~ 15206402 (-) True AMCG00021341
AMCG00021353 mRNA upstream 79371 15384103 ~ 15387522 (-) True AMCG00021353
AMCG00021351 mRNA upstream 103152 15407884 ~ 15426650 (-) True AMCG00021351
AMCG00021352 mRNA upstream 129308 15434040 ~ 15462050 (-) True AMCG00021352
AMCG00021356 mRNA upstream 176119 15480851 ~ 15489397 (-) True AMCG00021356
AMCG00021357 mRNA upstream 210887 15515619 ~ 15526183 (-) True AMCG00021357
TU106219 other downstream 1235328 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 1369357 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 1659478 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 2485639 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 2759531 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 936272 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 1342407 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 1342407 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1994148 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2114872 17419604 ~ 17423418 (-) True G85953

Expression Profile