RNA id: AMCG00021353


Basic Information

Item Value
RNA id AMCG00021353
length 2071
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00021353
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15384103 ~ 15387522 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATAGCAATGATAGCCTGTGGCGATGCCCCCTGGCAGGGCCGCGGAGCTACGCGACGGCCACCATGACGGACCGATTCGACTGCTTCTACTGCCGGGACTCCCTGCACGGCAAGAAGTACATCAAGAAGGACGACAAGCACTGCTGTGTGCGCTGCTTCGACAAGCTGTGTGCCAACACCTGTGCCGAGTGCCGCCGGCCAATCGGCTCCGACTCCAAGGAGCTGCACCACAAGAACCGCTACTGGCATGAGGACTGCTTCCGTTGTGCCAAGTGTTACAAGCCCCTGGCCAGCGAGTCCTTCAGCACCAAAGATGACAAGATCCTGTGTGGCAAGTGCAGCTCCCGAGAGGACTCTCCCCGCTGCCATGGCTGCTACAAACCTGTCCTGCCAGGCTCCCAGAACGTGGAGTACAAGCACAACGTCTGGCATGAGGAGTGCTTCACCTGCTTTCAGTGCAAGCAGCCAATCAAATCGCAGAGCTTCCTGACCAAGGGGGATGACATCTACTGCGGACCCTGCCACGAGAAGAAGCCATCACCTCAGGACCAGCCCTGGCACTCCGAGTGCTTCGTCTGCAACACCTGCAGGAAGCCCCTGGCCGGCCAGCGCTTCACCTCCCACGAGGAGAACGTGTACTGCGTGGACTGCTACAAGACGAGTGTCGCCAAGAAGTGCTCTGGCTGCCAGAACCCCATCACTGGGTTTGGGAGAGGGACTAACGTGGTCAACTACGAGGGCAACTCCTGGCATGAGTACTGCTTCACCTGCAAGAAGTGCTCCCTGTCTCTGGCCAACAAGCGCTTTGTGGTGCACAGCGAGAACATCTACTGCCCCGACTGCGCCAAGAAACTGTGAGGGGAGCGGGCTCCAGCACGCCCTCGCTCAGGCCCAAGGAAGGCAGTGGCATGAAgtctatctctttctcttttaacTACTTTTGGAAGggtaataaacaaaacaaaaagcgcAGTGGGTCACAACTTTGGAAGCTGCAACTGAGAGAAGTGGAAAAGGGCCTTCTGAAGGTTGGGAGGATAATATTACCTTTTTTACAGTAACAAAAGATTAGACAGAAGGACATTGAGTGAATTCaatcagattttttaaatggggaaaaaacctGAAGCAGAGAATCTCTTTCCAGTTGCAGCGCAGTCTGAGGCAGTGAACCATTGTGCAGTTACATTCAATTCTAATGTCATCTTACACTTTCACCTCTTCATTATACCTTCCGGTAACTTTGTGACTTGTTTGTTTCCGCATGCTCAATATTCAGTGCTTTGCCAAAGGTGATATTTGAAGATTTATTATTATCCCGAGACTCCTGTGGGTTTGAGCCTCGTGAGATGGCTTTGACTATTAATACAGCACATATAATggtttgcaaagaaaaacaacaaaaaagcagcaTATTAACTAACAACTTTAGTTATCAAGCATTTGTATTCAATTCAGCATTGTATCTGTGTGTTGACTAAATAATGGGCAAATATGGTGTGACttgcaatgtaattttttaGTAACCATTGATGCTTTTGCACCTTTCACCAAGTTTAAAAGCGGTTTCAAGCCAGTGTGCCAAGTTATATCTGCTGCTGACATCCTATGgctttgaaatgtgtgtttggCTTTACCTGGGTCAATGCAATATATGATTAGTTGGAGACCTTTCACGCTTTGCCTCCAGGTAAATACAAACTCCATGACAGCTTGCTTTGTCTCTCAGtgctaaaattaaatgttttgcaagCCTCAATAGACAGCGTGTactaaaatatgaatgtctTGTGAATGCAATTTAACTGCTCAATACAGAAACCGTGCCTGAATATTGTGAAAGGATGTGTTTTCTGGTATAGGTGATTTTTGGCTTtgggtgttattttatttttccataggATATGTTGCACACGTAACTTTGCGCTGAAAGTTACTTTGCTAGTCGTCTAATCACATATGTTGCTTTGTGCTGGAAttgtttaaactgaaaaaagaaattAGCAAACAGACTTGTGGAGTGAAATCATACCCGCTGTAACATtggaagaataaataaaggaaaatt

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14365 FHL1, SLIM1; four and a half LIM domains protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106676 lncRNA downstream 172 15381352 ~ 15383931 (-) True G85471
TU106657 lncRNA downstream 5355 15319098 ~ 15378748 (-) True G85456
TU106493 lncRNA downstream 340200 15041063 ~ 15043903 (-) True G85332
TU106403 lncRNA downstream 829711 14549592 ~ 14554392 (-) True G85251
TU106215 lncRNA downstream 1312778 14069343 ~ 14071325 (-) False AMCG00021304
TU106674 lncRNA upstream 43520 15431042 ~ 15432371 (-) True G85470
TU106714 lncRNA upstream 186104 15573626 ~ 15575997 (-) True G85498
TU106753 lncRNA upstream 363029 15750551 ~ 15755446 (-) False G85530
TU106752 lncRNA upstream 365566 15753088 ~ 15755446 (-) True G85530
TU106760 lncRNA upstream 417214 15804736 ~ 15861947 (-) False G85535
AMCG00021347 mRNA downstream 79371 15287225 ~ 15304732 (-) True AMCG00021347
AMCG00021343 mRNA downstream 101214 15280349 ~ 15282889 (-) True AMCG00021343
AMCG00021344 mRNA downstream 106763 15267040 ~ 15277340 (-) True AMCG00021344
AMCG00021342 mRNA downstream 120699 15260922 ~ 15263404 (-) True AMCG00021342
AMCG00021345 mRNA downstream 139403 15235709 ~ 15244700 (-) True AMCG00021345
AMCG00021351 mRNA upstream 20362 15407884 ~ 15426650 (-) True AMCG00021351
AMCG00021352 mRNA upstream 46518 15434040 ~ 15462050 (-) True AMCG00021352
AMCG00021356 mRNA upstream 93329 15480851 ~ 15489397 (-) True AMCG00021356
AMCG00021357 mRNA upstream 128097 15515619 ~ 15526183 (-) True AMCG00021357
AMCG00021355 mRNA upstream 141147 15528669 ~ 15535134 (-) True AMCG00021355
TU106219 other downstream 1332206 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 1466235 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 1756356 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 2582517 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 2856409 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 853482 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 1259617 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 1259617 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1911358 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 2032082 17419604 ~ 17423418 (-) True G85953

Expression Profile