RNA id: AMCG00021363


Basic Information

Item Value
RNA id AMCG00021363
length 302
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00021363
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15827604 ~ 15834441 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcacccccccacccccctctgaCTGCAGTCCCGTACTATGGCTGTGAATGTAGCCATGGGCCGCGACACCAAATGGCTGACGCTGGAAGTTTGCCGGGAGTTCCAGAGGGGCACCTGCTCTCGCTCTGACGCAGAGTGCAAGTTCGCCCACCCATCACGGAGCTGCCATGTAGAGAACGGCCGGGTCATCGCCTGCTTTGACTCCCTCAAGgtTCAGGATTTCTGTTTCAAACCTTTCTTAGGGGAAGGCACAGGACCAGCAGCATCATTACCTCCTACAACAGAGCCGGCAGCATTGTAG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0007275 multicellular organism development biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K14943 MBNL; muscleblind

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106723 lncRNA upstream 72172 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 251086 15575549 ~ 15576518 (+) True G85497
TU106625 lncRNA upstream 260778 15515453 ~ 15566826 (+) True G85426
TU106656 lncRNA upstream 264687 15561745 ~ 15562917 (+) True G85455
TU106641 lncRNA upstream 297932 15487242 ~ 15529672 (+) True G85440
TU106784 lncRNA downstream 86298 15920739 ~ 15922721 (+) True G85552
TU106874 lncRNA downstream 306082 16140523 ~ 16169886 (+) True G85623
TU106936 lncRNA downstream 455308 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 713216 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 735006 16569447 ~ 16569650 (+) True G85757
AMCG00021365 mRNA upstream 35455 15790737 ~ 15792149 (+) True AMCG00021365
AMCG00021366 mRNA upstream 42633 15779989 ~ 15784971 (+) True AMCG00021366
AMCG00021361 mRNA upstream 75434 15740735 ~ 15752170 (+) True AMCG00021361
AMCG00021360 mRNA upstream 167347 15653744 ~ 15660257 (+) True AMCG00021360
AMCG00021358 mRNA upstream 182619 15634639 ~ 15644985 (+) True AMCG00021358
AMCG00021362 mRNA downstream 2085 15836526 ~ 15853658 (+) True AMCG00021362
AMCG00021371 mRNA downstream 56439 15890880 ~ 15891146 (+) True AMCG00021371
AMCG00021369 mRNA downstream 63716 15898157 ~ 15909556 (+) True AMCG00021369
AMCG00021368 mRNA downstream 93219 15927660 ~ 15931593 (+) True AMCG00021368
AMCG00021367 mRNA downstream 100995 15935436 ~ 15939300 (+) True AMCG00021367
TU105723 other upstream 3726897 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 4840430 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6404185 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7194194 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8706367 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 229159 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 755740 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 822203 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 822203 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 1163436 16997877 ~ 17004131 (+) True G85869

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031527 True 912 mRNA 0.60 5 NC_007113.7 47754419 ~ 47811583 (+)