RNA id: AMCG00021364


Basic Information

Item Value
RNA id AMCG00021364
length 3418
RNA type mRNA
GC content 0.55
exon number 11
gene id AMCG00021364
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15862894 ~ 15870530 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caagcaCAGAGGAGCTGGACACATCATCACACCGAGGAggacaaaactaaaactttgCAAAACACTCCACACCTACTACCACAGgatGGCGCAGGGATTCGCCTCAGTGTTCTACAGCGAGCCAGCGGTGCTGGGTCTTCTTGCCAACGTCTTCAGCGCCTTCTACGTCGCGCTGCAGAATTTTGCGCGCGTTGCCACCGACAGACAAGCGCTGGGCCTTGAGAACATGCTGGCGGGAGTGCACCTCATCTTGATCGGGGGCATTGTGCAACTAGTGGCCGGGCTGCTCACCTTCCGCAAGTATGACCACCTGGCCGGGACTACATTCGTGGCCTTTGCAGCACTGTGGGGCAGCTACGGGGCGACGCGGATCGTGCTGGGGAGTTCAGAGCCGTGGAACCTCACCCTCCCTGGCAATGGCAGTGTGCCCCTCCCCAGCAACAGCACGCACCCACCTGTAGAGGAGTCCGCGTTGGCGGGGCTGGTGGCTTACATCAGCGTGGCGTTCATTGTGTCCTTCTGCTCCGCCACGGCCAACTATATCATGCCCTTCGTATTTGGTGCCATCACCATCACGCTTGTTTTTGAGGCAGTGGGGCTGTTTGCCACCTGGTCGCTGGTGGTGTCGGGCATCACTCAGATGGTCATTGTGTGCTGCGGCTTCTACGGGGCGGCGGCCCTGCTGCTGAAGGGGCTGTACCAGCGCCATGTGCTGCCTGGCTTCGGCAACGCGCTGTTCGACGTGCTGCTGCTGGGCGCCAAGATCAAGCCCGCGCAGCGCAAGCAGGCAGGCCGTGgcactgaggaggaggagaagaagaagaacagcaCGTATGCTGAGCCCCTGGCACTGGGCAACATGAGTGACACGGTGTCCGCTGCCATCCTGGCCTTCTACTGCTTCGGCTACCCACGCTCCTTCCAGGTGGGAGTCCTCTGGGTGACCATCAACTCGGCAGCTCAGCTCCTGGCCAGCTACTACGCCTGCATGCGCCTGGACATCTTCCACGCCACCAAGTTTGGTCTGCACTGCGGCTACTGGCTGGTGCAGAGCTGGGAGGAGTTCGTGGCCTCAGTGGTGCTAGTCAGCAACGGGAGGGAGGAGCTCAGCGAGGCACGGGCGGCCATGCTGGGTGGATGGCTGTTCCTGGCATCTGCCCTGCTGCTGTGCCTGTTCTCCCTGTGCCGCAACCGCCTAGAGCTCCTGCACAATGCCGCCTTTGCCCTGCTCACGATTTCCACGCTGCCCCAGATCCGTGGCCAGGCACACTACACGTTCTTCGGGGTGGCCTGCGTGCTGTATGCCGTGCTCAGCCTGGGCATCTCCTTCATCAGCCTGGTCAACTCCATCGCAGAGAAGGCCTTGATCCCACTGGGTACCCGACTGGTCAGTGCGGTACAGTTGCAGGAGGTGTTGTTCGGCCTGAAGCGCTGCTTCACCCCCTATGCCATGCCACTGCCCGCCGCCTGTGAACCCCGAGACCTGCGGTCCCAGCTGCCGGATGCCCTGTTCTTCCTGTGTAATGGCCTTGCTGCACTCTCTGCCATCCAGATCTCTGGCTCCTTCCCTCTGCGCTACTACCTGTCCGTGCCCTGGGTGCTGATTCCTGGCACAGTGCTCCAGCTCTACGTGGCCCGGCTGCAGGTTCGAGGAGGCCGCCGGTTCGGGCCCACACTGCCGTTCTGCTACGCCGCCATCTGGGCCGCCTGGACCTGGCTGCGGTTTGCAGgCCCCACCATGAGCATTCCCGAGCCCTCTCTGCATGCCTTCACCACTGGCGCTACGGCCTTTCTCGTTATCAACAGCTTCATCATCGTCATGGctGGCTACTTCAGTGTGGTGATGCTGGTCCTGACAGCCATGATGGAGGTGCTCATTGTTTGCTTCCTGTTGTTCACGCTGAACAAACTCCCACTTCCTCTTGAAGAAGTGTTCCTGGCCCTCTTCACTGTGCTGTGTCTCTATGGCGCCACTGCTTCCTTCGCCAACTACCTGTTCGAAAAGAACCTAATTCCCATGGGGCCGCAGCTGATGAAGTCTGGGCGGAACAAGAAGTCTGAGACAGatgccctgccctgcccctgccccaCTTCCCAGAAGACCAGTGGGCTGCTGACCATTGCGCACATTCTGGAGTCCGGGGGTGTGTGCGGGGTGCCATCTGACACTGTGTACACACTGGCCGCCTCCTGCAAGCACCCAGCCGCCATTGAGCGCATCTACAACATCAAGGACCGTCCCATGGAGAAGCCAATCTGCCTGACAATCGGTAGCCTGGAGCAGCTGGAGGATGTGAACCCACCCTTCAGCCCGCTGCTGTGGGAGTTCATGAGGAATGTCTACCCAGGGGGCATCGGCTGCATTGTCAGGAAGGGAGAGTGGCTGAAGAAACTAGGGGTGGGCCCAGCCTATGACTACGTAGGCACCAAGGACAGCATCATGATCCGCATCTCGGACCTGACTGTTACCACGCACCTGCTCAGCATGACCGGGCCCCTGGCCATCACCTCTGCCAACCCCAGTGGGGAGCCAGACAGCACACACCATGACATGGTCATCACGCGTCTGGGACACAAGGTGGACGGCGTGTTGTGCGATGGTGACTCCACTGAGCTGGTCTCCTCCACAGTGGTCATCTGTACCAAAATTGACGAAGGGAAACTGTCATTCCTGAGAGAAGGGGCAGTGCCCAAAGCCAAAGTCCTGCAGATATTCGAGCGTGTCCAAAACAAGATGGCCATCGTTGATGCAGCATAAAGAACAGATCCACCTTTCTGCCTCTAAACCTCACAGCCTTTCTGGGGCTCACATGGCAGAGcagaacacaacaaaaaaacctaCAAAATATAACATGAACTACAGTAATTCACCTTTATATGCTGGAAGACTGAGAACGAATACTTGcggacaaatgcattttaaaagaacaataacgtttttctttttcttgtggAGGTGATACGGGTTGGTAATGGCAGAAATGACTCCAGTGGTATAGTCATATTTCAGCTTGTATATTTCAGTGCAGTTGTCAACACTCATATCTATGACtacaaggagagaaaaaaaagttaatatttgtatttatttaaatgaacctTAATGTATACACTAGGAGTATCTTTTGAGAAAATACTCTGAAacacattgtaaatatttagtttgtgtatatatgtatttgtacagCTTACTCACATTTTTGCTGTGGtgcaataatttgttttttaataaggaTTGTGATATCTAAGTGGTACATGCTGTGACATGCAGAATGTCTGCTTAAAGGATACAGAAAGTGGCAACCAAAATGGCAACAATttgtacataataaataaatatgcatttgaaattaTAGTGTGGGTTACAATTTGTCTAGGAAGATGAATCTAACAAGCTGTGCTTAATTATTAAACAGGT

Function

GO:

id name namespace
GO:0004055 argininosuccinate synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106760 lncRNA downstream 947 15804736 ~ 15861947 (-) False G85535
TU106758 lncRNA downstream 947 15853032 ~ 15861947 (-) True G85535
TU106753 lncRNA downstream 107448 15750551 ~ 15755446 (-) False G85530
TU106752 lncRNA downstream 107448 15753088 ~ 15755446 (-) True G85530
TU106714 lncRNA downstream 286897 15573626 ~ 15575997 (-) True G85498
TU106804 lncRNA upstream 50492 15921022 ~ 15922730 (-) False G85568
TU106805 lncRNA upstream 50492 15921022 ~ 15934177 (-) True G85568
TU106806 lncRNA upstream 54428 15924958 ~ 15929779 (-) True G85569
TU106818 lncRNA upstream 106035 15976565 ~ 16020742 (-) False G85580
TU106828 lncRNA upstream 122722 15993252 ~ 16001221 (-) True G85590
AMCG00021355 mRNA downstream 327760 15528669 ~ 15535134 (-) True AMCG00021355
AMCG00021357 mRNA downstream 336711 15515619 ~ 15526183 (-) True AMCG00021357
AMCG00021356 mRNA downstream 373497 15480851 ~ 15489397 (-) True AMCG00021356
AMCG00021352 mRNA downstream 400844 15434040 ~ 15462050 (-) True AMCG00021352
AMCG00021351 mRNA downstream 436244 15407884 ~ 15426650 (-) True AMCG00021351
AMCG00021376 mRNA upstream 131689 16002219 ~ 16008079 (-) True AMCG00021376
AMCG00021382 mRNA upstream 249658 16120188 ~ 16121592 (-) True AMCG00021382
AMCG00021388 mRNA upstream 339208 16209738 ~ 16212465 (-) True AMCG00021388
AMCG00021392 mRNA upstream 345906 16216436 ~ 16217455 (-) True AMCG00021392
AMCG00021387 mRNA upstream 363787 16234317 ~ 16242423 (-) True AMCG00021387
TU106219 other downstream 1810997 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 1945026 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 2235147 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 3061308 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 3335200 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 370474 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 776609 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 776609 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1428350 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 1549074 17419604 ~ 17423418 (-) True G85953

Expression Profile