RNA id: AMCG00021367


Basic Information

Item Value
RNA id AMCG00021367
length 2980
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00021367
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15935436 ~ 15939300 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCTGCCCACAGTACCCCTGCCCTTAGGCGCACTGGGGGTGTACGAGAAAATCCTGTATCCCATTATGGGCTCCGCTGTGCTGCTAACCCTCGCCTGCCTGCTGATCCGCAATGAGAGGCTAAGGGTCATCCTGGTCCCCATCACCCCCCGCCCCAACAAGAACCTGGAAGATCTCTGGCGCAAGTACAATGGCAATGTGGAGGAATGGCTGCACATCCCAAAGGATATCGTGGACGGCTTCAGGCCCAACTTTTCGGAGACGGCCTGCCCGGTACGGGAGTACTGCACCCTGCCAGTGCGGGAGAGCTGGACCGGCTCCGACTGCTCCCTGCCCATGATGAGCGACGACACCGACTGCCTCTCCACCTGCAGTGCCTCCTCAAGTTCCACTCTGCCCGCTCCTCCCTACGATAACACCCCCTGCCAGGTGTGACTGGATCAGCCCTCCccatcccctcccctcccttctccccctcccccagcctAAAACATCCAACCATGCACCAGTGAATGAATGTTACCATGGACCAAGACCCACACAGCTGCGTGACCCTGAACTGGTGGGTGCCCAGGCAGCCACAGGAGGCGCTCTTCAGCAGCAATCTGaataacccccccaccctctcccaTCCACTACTGAGCCCTGAGCTCCTGCTGAGATGAGCCAGTCACTGGCCCCCCTGGCCCTACTGGTCCACATTTAATCTTCTTCCAGGTCACCTAGAGATCAATGTATCTAAGACGCCTGCTTCCTCTGCTGGATCGGGGCAGTGGGCAGGATCATCAATACCCACAACCCACCCGCTACCACACCCACCCCTCATGGCTCTGATACAGGAATTCACTGAAGCTATGCCGTGGCGTCTAGCTTCGTTTCTCCACTGCAGGACCTCCCCATCACTGTGGGACACGTGCAGTTGAGTGCCAGCAATCAACCAGATCAGCTCACTCTGCACAACAGGAAGTGGCTATCTGATGCTCACAGGAAGTGGCTATCTGATGCTCACAGGAAATAGCTATCTGATGCTCATAAGAAGCAGCAGCGCAAATCAACACATTGACAACAAGCAGTCTCACCTGCCGAGGCCAGTCTTTTTCTctgttcctctttcttttttctgttccaAGTGTTtcccaaaaataaatgatggtAGCCCTTTTGCAGTGCCAGCGATACAACCATGACAAAGCACCAGGCACAGAATTATGTGTGTTCTTCCGATCTTCCTCATCAGGGCGGCATAAAGGGCCTGCAGCACCTCTAAAAAGTTGTTGCAGTTTTGAAGTAGTGGATAGCAACAAGGTGTCATCAACACCTATGTTATTgatgtgtattatattttattgtcccATGTTATGACAAAAACATCTTCAGCTCTAAATTATTTTGTCCTTAATGGCAAGGTTGATATGCATTTTGCCCCCCAAATGTGCTATAGGTGACATTTGGCTTCCTGTGTCTAAACAATAAAGTAGAAACAGTAATTGTGTCTTAATGTGTGTCTCAAAGTGAACCAAAATGCTGCATTTAGGGGTTAATGTCgctttgaatatttttttcagaatgaTATCCCTGGACCTCCGTACATTTTACGCCttttcataaacataaacaactATCTAGTGCTTTTACATGGTCGTTTATCACCGGTGTCCCAAATTCTGCCTCAATTCAAATAGGGCTCCCCCAGCTCCAAAACTCCAATTTAAGCCCTGGTCCTTGAGAATGGGGGGCATGGATCCCTGTCACTTCTCCTATCAGAGGCAGAAATGAATGGTCAGCTTTTTTACAAAGGATTGTACAAAGGATTTACACTGGATTGTCCCTCTatgatgtgttgtgtttgtctGAGATGTGTGTAATGTTCTGTAATTCCAGAATGGAATGTGGTTttggaatgttattttttgttctttgaagACATTGTCGtgaggttttgttgttgttattgtgccTGCTAGTTCTTTCTTTTTGtgggttttaattttgtatataattatgatctagaatgtttattattattaataccatttgcattttgttgagGAAAGTTTCTGCATCAATACAAAAACTAAGAAATGTGTGTATGGTAGAATGTGGATGATCAATCCATTGGACTCTGCAATGAGCCACAGACAGATTTAAATGTACCCAACTGCTATGCATCCCATACCTCGCACTGATGATCAAAGACAGTTTGAGgaaaacaatgtgaaagaatTGTGTGCAAGGAGGGGGTGGATACTGTTCTGTTCTGATACCggcactgagcacatgtgacaatATATCCTATCAGATCCCTTTGTAGTGTGTCACAGTAAGGCACTGCTGCAGCTGCACCACAGTCCCAATGCCTGGCCAGGGCTGACTAGGGGACAGTACATGTCCCCTGCCCTAAGTTTGACCACCCATGCAGAGAATACCACTGTGCTGGCAGGCAGAGTCAGACACAAGCCTGGGACTGATGTCATTATGATGCACCTTCATTGCATGTACAGTGATCTGAAGAAGCTGttaaccacccccccaccccactacTACTACCACTGCCATGTGTCTCCTCACTTTATAATGACCAATATTCATCAATCATGAACAGTCAGTCTGCTGTAGTTAGTCTCTTCCATGCTTCAGATGCATCCAAAAATAGCTGAACACGTCCCTCCTGTCTCCCTGGTTAGAGGGTTCTGAGAATTTGGCTAACCGGCTGGCTGATGCTCTTCCATTTGCTGCTCCTGTATTGACACACTGTCctattttttgctttgtttttctcaaaccactagaaaaaataaatcgaaAAAACAAACCTGCTACTCTTTGATGTTTCAATATCCGAAAGCTGAAACATTTTGGCTGCTAACGGGAATCGGCtcactgtaatgtgtgtatttcatcattatcatcaacCCCTCTTGAATCTGTGATGTGTTGGTCTTATTACTatcctcttttttttctattgtttgaataaaaa

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106784 lncRNA upstream 12715 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 180004 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 358918 15575549 ~ 15576518 (+) True G85497
TU106625 lncRNA upstream 368610 15515453 ~ 15566826 (+) True G85426
TU106874 lncRNA downstream 201223 16140523 ~ 16169886 (+) True G85623
TU106936 lncRNA downstream 350449 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 608357 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 630147 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 632893 16572193 ~ 16572868 (+) True G85758
AMCG00021368 mRNA upstream 3843 15927660 ~ 15931593 (+) True AMCG00021368
AMCG00021369 mRNA upstream 25880 15898157 ~ 15909556 (+) True AMCG00021369
AMCG00021371 mRNA upstream 44290 15890880 ~ 15891146 (+) True AMCG00021371
AMCG00021362 mRNA upstream 81778 15836526 ~ 15853658 (+) True AMCG00021362
AMCG00021363 mRNA upstream 100995 15827604 ~ 15834441 (+) True AMCG00021363
AMCG00021370 mRNA downstream 41781 15981081 ~ 15987612 (+) True AMCG00021370
AMCG00021374 mRNA downstream 71894 16011194 ~ 16016920 (+) True AMCG00021374
AMCG00021372 mRNA downstream 83058 16022358 ~ 16037784 (+) True AMCG00021372
AMCG00021375 mRNA downstream 109216 16048516 ~ 16059328 (+) True AMCG00021375
AMCG00021373 mRNA downstream 124199 16063499 ~ 16073621 (+) True AMCG00021373
TU105723 other upstream 3834729 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 4948262 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6512017 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7302026 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8814199 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 124300 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 650881 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 717344 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 717344 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 1058577 16997877 ~ 17004131 (+) True G85869

Expression Profile