RNA id: AMCG00021368


Basic Information

Item Value
RNA id AMCG00021368
length 2281
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00021368
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15927660 ~ 15931593 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTGTGTGTTGTCATTTTGATGCCGCTGAAGTGAACCGAGTTGCGGCTGTATCTGGACCGACAAACCACCTTAAACATTAGGCAGCGTCGCAGATGCACATTTTATTGAGGGTCAGTAAGTATTCAACGGCCTGGCGTCATGAAAACCGTGTTTGTTACTGTGGGGTCAACGAGTTTCGATGAATTGATCCAGAGCGTCACCTCGGATGCTGCCGTTCAGGCTCTGACAGCGCTGGGCTACCAGAAACTGACCCTGCAGATCGGCCGCGGCTCGGTGCAGCCCAGCCCGGACGGCTGCCCGGGGATCGCGCTGCATGTCTTCCGCTACAAGGACTCCATCGCTGACGACATCCGGGACGCCGACCTGGTCATCAGCCACGCAGGGGCAGGGAGCTGTTTGGAGACGCTGGGAGCGGGGCGACCCCTCCTGGTGGTCGTCAATGATCAGCTGATGAACAACCACCAGCTGGAGCTGGCCAGAGCGCTGCACAGCCAGGGACACCTACACTACTGCACCTGCAGTAATCTCACAGAGACTCTGCGAACAGTGGACCTGTCTGCACTGGTGCCTTTCCTCCCAGGCCAGCCACAGACATTCGCCGTGTTCCTGGACAGGGCAGTGGGGCTGCAGTGAGGCCAGTCAGGGCCCACAGAGCCCTGCCAGCATCAGCTCTCTTGCTCTGCAGCTCAGCACAGATGCACTGTGGACTCTGGGAGCATCCTGGTCACTAGAGCTGGACTCGTGTGACGTTGTGAAGGCCGAGTGCCAACAGGCAGAGCTGACCCAGAGAACCCGACCGCTTACAGAACCCAAGCTGTTCCATCCCGAGGGCAATGTTTTTTGGGGATTCTGAGCACCAGAGCTGTAGTCTGCTGTACCAGACATTTAACAAACGTTGaccccaacaacaacataatGGTGTAAATTCCCTGCAAATACACTGTGGGATGTTTTATGGGGGTggtattaaaattattaaaacagcatttgaaaagtatatatatatatttttaattgttatttataattataggAATTAATTACCCAAGATATTCTGcaacataaattatacaaaacaaggCCTGTCTCTGTCACGAGGTGAAAATCTAATCGAGCGATACTCGTCAGTGGAGAAACTTTCTCCATGGGTGTAGATCAAGGAATAGgttatgttatatatatgttgaggttttattttgttttgtttttaatgcaaactGGTTTGCCTATTTGGCTTGTAATCAATTCCCCTGGACTGAAGTGTATGTCCACAGACTTCCTCTCCTGACCACATCTCGTAATTCCTCAGGCGAACAGAGTCATACCCAGAACAAATTACCAacttaagaattgattttaaaagtttttaatcataagtattaaaaatttgaattgtttttttatgtaatgtaaaatactacacacaataaaacagtattttaaatcttATGGCTGCATAGAATTGTTAGAAGAACTGTGTAGAAGCCCatccaggagagagaggctCGTCGATTTTgattttgagaaagaaaaagaagagtaaacaaagaaaacaaaacaaattcacgGGGGAAGGGGACTGACAGGTCTTGGTTCAAACACGAGAAATGCAGTAACGCCGAAGCTATTAAAGTTACTTTCACTGCTGGCAAGAACAGGGCAGTAGTTCCAGGGCTGAACTCACTAGCTCAGTGTCGCTTTATCACACCTCAACattaagcacacacacacacacacacacacacaaacagggccGCCTTCGCAGCTTCACAGGAAACCACCCTGCAACACAGAAGACATGACTCGAGGCACgcacatagagagagagagagaaagagaaagagagaggttcCAGTCAGCTTCCATCACCGTAACAACtcagaaagggagagagagcgagcgtgAGACCTCTGTCTGGGCTCACCATGGCATTGGGTGTATTCCTGCTTCTTTTCGCAGCATCTCTTCGCGGAACAGGAGGCAGCGGCGCCATCAGTGAGTGCTTTTACACATCTCTGCCTCCCTCCTTCCATTCAGAGTTGCTATTCTACCTGCGCCACACCACGGCTCATATCCGGCCTAGCTAGAACTgaaaacattgttgttttttaaatgtaactgttaaGCTGCATGTttctgagtctgtgtgtgtctgtcttgaGTTGGGCCAGGTGGTCAGGACCCTATTTTGTTGCGGTAACAGATCCTTTGGTCCAAACCCCGGGGCTTTTTAAGGGGGAAGTCATGCCACCTCTTATGGTGTTAGCAGTTTAACCAGA

Function

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K07432 ALG13; beta-1,4-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106784 lncRNA upstream 4939 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 172228 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 351142 15575549 ~ 15576518 (+) True G85497
TU106625 lncRNA upstream 360834 15515453 ~ 15566826 (+) True G85426
TU106656 lncRNA upstream 364743 15561745 ~ 15562917 (+) True G85455
TU106874 lncRNA downstream 208930 16140523 ~ 16169886 (+) True G85623
TU106936 lncRNA downstream 358156 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 616064 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 637854 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 640600 16572193 ~ 16572868 (+) True G85758
AMCG00021369 mRNA upstream 18104 15898157 ~ 15909556 (+) True AMCG00021369
AMCG00021371 mRNA upstream 36514 15890880 ~ 15891146 (+) True AMCG00021371
AMCG00021362 mRNA upstream 74002 15836526 ~ 15853658 (+) True AMCG00021362
AMCG00021363 mRNA upstream 93219 15827604 ~ 15834441 (+) True AMCG00021363
AMCG00021365 mRNA upstream 135511 15790737 ~ 15792149 (+) True AMCG00021365
AMCG00021367 mRNA downstream 3843 15935436 ~ 15939300 (+) True AMCG00021367
AMCG00021370 mRNA downstream 49488 15981081 ~ 15987612 (+) True AMCG00021370
AMCG00021374 mRNA downstream 79601 16011194 ~ 16016920 (+) True AMCG00021374
AMCG00021372 mRNA downstream 90765 16022358 ~ 16037784 (+) True AMCG00021372
AMCG00021375 mRNA downstream 116923 16048516 ~ 16059328 (+) True AMCG00021375
TU105723 other upstream 3826953 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 4940486 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6504241 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7294250 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8806423 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 132007 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 658588 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 725051 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 725051 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 1066284 16997877 ~ 17004131 (+) True G85869

Expression Profile