RNA id: AMCG00021369


Basic Information

Item Value
RNA id AMCG00021369
length 1661
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00021369
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15898157 ~ 15909556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTTTGCGCGGTGCCCGTGCCAGAGGTCCGACTGGCACAACACACGACCAGCCGAATAGCGCTTGCCCGGGCGAAGACTGTCCTCTAGGCTAACACGACTGCAGCCCAGGAAGAGCCTGAGTAGCCAGGGCGAAATTCAAAGAAATAAACgccttaaataaatatacagtctATATTCCAACATTTCCCAGAGTTTATTTTACTCCTGCATGAGCGGTTCTTTTCCACTGACAGGACGATGAAGCACAACTCCAATGTACCTGCATTTCTGAGCAAACTGTGGACGCTGGTGGAGGACCCCTCTACCAATGACCTGATCTGCTGGAGCCGGAACGGCTCCTGCTTCCAGGTCTCCAATGAGCGCCTTTTCGCCAAGGAGGTGGTGCATGTGGAGGTTGGGCTGCCCAGGGAGGCGGAGGAGAGTGTGGAGTTCCAGCACAGGCACTTCCTACAGGGCCAGCCCCAGTTACTGGAGCTCATCAAGAGGAAGGTGTCCCTCAGCAGAGGGGACGAGGGCCGACTGAAGCAGCAGGAGTTCTCGCAGGTCCTCCTGGACATCCGTCAAGCCCAGTGCCGTCAGGACGTGGCGGACTCTCAGCTTCTGGCCCTAAAGAGAGAGAATGAGAGCCTGTGGAACGAGGTGGATTCCCTGAAGCAGAagcaccagcagcagcacaaaATTATCAGAAAGATCATCCACTTCATTGCCAGAATGGTACAGCCTAAGAGCATCGCAGGCCTCAAGAGGAAGCTTCCCCTGATGATTGACAGTCCCATGGGCCACTCCCACCCCAAGTACAGCCGTCCCATCACCATGGACCCCAGCCAGGAGGCCTCTGCCGTCCATGGATTTCCGCTCGGCTCCTCCACGTTGGGCCCTCTTGACTGCGGCGGCCTGATCATCTCTAAAGTCACTCACCAGCGGGCGTCCGGCCTGCTCCAGAGCCCCCCCCTAGGACACAGCAGTGTGGACAGCCCCCTGCAGGTGAGCCATAGACCCCTGCTGACGGAGAGCCTGGTCCGAGGCACGCAGCCTAGCATCCACCCCTCCACCCTCACCCCCGCAGACCTGTACTGCTCCCTGGACGACTGCACCCTCACCACCCCAGAGGAGGACACGGCTGAGCGATCTGAGCTGTCAGACCCACTGGCGTTGATAGACTCCAGCCTGGCCCAGATCCGTGCTTTCCTGCCCGACACTTCCCGCCTCGGCCTGGATCTGCTCAGAGAGCTCTTCAGCCTGACACCCTGTCCGGACACAGAGGGAGACCCCCTCAAGAAGCACACGGGCCCAGTGGAAGAGGATCATGGGTCCTTGCAGTCACAGAGGAACAGAGtgGAGATGGTGCAATATTGTGGGATGCTGCATGATTGCCAGAcagagCAGGGGGAAGGAAACAAATGAGCTCCTTTGTagagtacaaaaaaaaactaactccGCGACAGAGGGCGGTGCAAAGCGAAACCTCTGCAGTGATCTGTGTTGTGGAGTGTATCTGGACCAGGAATTATCTTTtttgtgattaattattttgttattcaaatacatggaaaaacaacatttgttgCACAGACATTTCtataactgaaaaatatataaaacatataggtAAAACATTTGTCAAATTGAGGTGTAATTATGTATTGAGTGCATGCGAGGA

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0008213 protein alkylation biological_process
GO:0043414 macromolecule methylation biological_process
GO:0006479 protein methylation biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0016571 histone methylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106723 lncRNA upstream 142725 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 321639 15575549 ~ 15576518 (+) True G85497
TU106625 lncRNA upstream 331331 15515453 ~ 15566826 (+) True G85426
TU106656 lncRNA upstream 335240 15561745 ~ 15562917 (+) True G85455
TU106641 lncRNA upstream 368485 15487242 ~ 15529672 (+) True G85440
TU106784 lncRNA downstream 11183 15920739 ~ 15922721 (+) True G85552
TU106874 lncRNA downstream 230967 16140523 ~ 16169886 (+) True G85623
TU106936 lncRNA downstream 380193 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 638101 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 659891 16569447 ~ 16569650 (+) True G85757
AMCG00021371 mRNA upstream 7011 15890880 ~ 15891146 (+) True AMCG00021371
AMCG00021362 mRNA upstream 44499 15836526 ~ 15853658 (+) True AMCG00021362
AMCG00021363 mRNA upstream 63716 15827604 ~ 15834441 (+) True AMCG00021363
AMCG00021365 mRNA upstream 106008 15790737 ~ 15792149 (+) True AMCG00021365
AMCG00021366 mRNA upstream 113186 15779989 ~ 15784971 (+) True AMCG00021366
AMCG00021368 mRNA downstream 18104 15927660 ~ 15931593 (+) True AMCG00021368
AMCG00021367 mRNA downstream 25880 15935436 ~ 15939300 (+) True AMCG00021367
AMCG00021370 mRNA downstream 71525 15981081 ~ 15987612 (+) True AMCG00021370
AMCG00021374 mRNA downstream 101638 16011194 ~ 16016920 (+) True AMCG00021374
AMCG00021372 mRNA downstream 112802 16022358 ~ 16037784 (+) True AMCG00021372
TU105723 other upstream 3797450 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 4910983 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6474738 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7264747 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8776920 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 154044 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 680625 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 747088 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 747088 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 1088321 16997877 ~ 17004131 (+) True G85869

Expression Profile