RNA id: AMCG00021370



Basic Information


Item Value
RNA id AMCG00021370
length 1127
RNA type mRNA
GC content 0.62
exon number 7
gene id AMCG00021370
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15981081 ~ 15987612 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTGTGTGCCGTGCTCCCCTGCTGTGCCAGGCCGGAGTGTGGGCCGTGAGAGTGCAAGCACCAGTGGGCACGGCAGGCAGAGGGGGAGGCGGGCAGACAGCAGGAACCTGGCAGCCGTGGCGTGGGAGAGCTCTGTGCATCAGAGACGGCCGTCAGCACTACGGCCGCCCGCGCACTTTGCAAGCAGCTGTGTGGTGAAGGTGAATTCAGAGAAGGAGCGACCCCAGCTGCTTTGTGTAAAGGCTCTGGCCAGCAGGGGGCGCCTGGACTCGGTGacccaacagatgagctaccaCCCCCAGTACCTTGAAAGCTTCCTGCGCACACAGCACTACATCCTGCACATGGACGGGCCCCTCCCCCTGCACTATCGCCATTACATCGCCGTCATGGCTGCAGCCCGGCATCACTGCCGCTACCTGGTCTCTCTGCACTCTGCCCACTTCCTGCGAGTGGGCGGGGATCCCGTGTGGCTGCAAGGCCTGGACCACGCCCCACTGAGATTGCGCAATCTAGACCAGATCAACAAGGTTCTTGCTCACCGGCCCTGGCTCATGGCCAGGCAACACATAGAGTCCCTGCTGAAGATCGGGGAGCAGTGCTGGTCACTGGCAGAACTGGTGCAGGCTGTGGTGCTGCTGGCTCACTGCCACGCTCTGACCAGCTTCGTGTTCGGTGCGGGGGTGGATCAGGAGTCCCCTGGCCCTCCTGGCCTGCCCAGCTACTGCTTCTGCGATGCCGCCAATGGCAACGCCACCCCCCCCGATGGCCTGCGGCCCCCCTCCCGCCGAAGGTTCCTAGAAGAGCTGCTGCAGGGAGTTTACATACAAACAGAGGAACAGAGCAGAAGGCATCTGAGCCTGCAGTACGACGACTATGATTATGGAGAAGTGAACCACCTGGTGGAGCGCAGCCTGAAGCTCTACATCAAGACGGTGACATGTTATCCGGACAGAACCAGCACACAGCTCTGCCCACGCTCCTGGAAGTCCCTCAAGCCAGCTGAGAAGGTCCATGTGAACTTGCTGATAATGGAGGCCAGACTGCAGGCCGAGCTCCTGTATGCGCTGAGAGCCATCACTCAGTACATGATCGCCTAGACCCgggggaggcagggaggggaggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106784 lncRNA upstream 58360 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 225649 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 404563 15575549 ~ 15576518 (+) True G85497
TU106625 lncRNA upstream 414255 15515453 ~ 15566826 (+) True G85426
TU106874 lncRNA downstream 152911 16140523 ~ 16169886 (+) True G85623
TU106936 lncRNA downstream 302137 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 560045 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 581835 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 584581 16572193 ~ 16572868 (+) True G85758
AMCG00021367 mRNA upstream 41781 15935436 ~ 15939300 (+) True AMCG00021367
AMCG00021368 mRNA upstream 49488 15927660 ~ 15931593 (+) True AMCG00021368
AMCG00021369 mRNA upstream 71525 15898157 ~ 15909556 (+) True AMCG00021369
AMCG00021371 mRNA upstream 89935 15890880 ~ 15891146 (+) True AMCG00021371
AMCG00021362 mRNA upstream 127423 15836526 ~ 15853658 (+) True AMCG00021362
AMCG00021374 mRNA downstream 23582 16011194 ~ 16016920 (+) True AMCG00021374
AMCG00021372 mRNA downstream 34746 16022358 ~ 16037784 (+) True AMCG00021372
AMCG00021375 mRNA downstream 60904 16048516 ~ 16059328 (+) True AMCG00021375
AMCG00021373 mRNA downstream 75887 16063499 ~ 16073621 (+) True AMCG00021373
AMCG00021384 mRNA downstream 115361 16102973 ~ 16103209 (+) True AMCG00021384
TU105723 other upstream 3880374 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 4993907 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6557662 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7347671 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8859844 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 75988 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 602569 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 669032 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 669032 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 1010265 16997877 ~ 17004131 (+) True G85869

Expression Profile