RNA id: AMCG00021373


Basic Information

Item Value
RNA id AMCG00021373
length 4215
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00021373
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16063499 ~ 16073621 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACTTTTCAAAACCAGATGAAACGAGACTATAGAAGAATACAAATCCCATGATGCAAGGCGCGATTTCGTTTCCTGAGTGGAGAAGATCAGCTGATTTCCTGTGTCTTTAAATCGTCTGCCATTAAGTCTGTCCGGgctatgtttgtgtgttttcaggcGGAGAAAAGCGATACAAACGGTGGGATCCTTGACCGAAACTGGAATTATGAATTTATAGATTTTATATTCATTCAACCGATAGAAAATAAACGACTGTTCTGTCTCGGGTAGTCTCGCATTAATtcgaaaaaaaacatttttttggtgTTATGTACCCGCGTTACGGTTCCCTTTTCCTGCAGTCCTGGAAAATGCACCCGGGTTTACACTTGTCGTTCTTCTGCTTGAAACGGAGACAGGTTAATAGACTcgattgttcttatttttaaaaatacacatttaaatctatataaatgtaactatcgatatatatatatatatatatatatatataacaagaaaGGAAGTGACGTATTCATAGTTCTATATAGCACCcacatagatatatacatacatacatggtgATAGTATTATTGTAATAACTAAGAAAAACTTGCACATGCTTCCAGGAACTTCGTGGTTTCGATTCTGTAAGATACGTTTTTGTTGcgtttatgtttacattttaaataagaatatatgtatagaataaatgtgtataatacataaaaacgtATTTATTCTTTTAGACTGGGACAACACCATTTCGAACTAGTAGAGTCTGGGACTTAAtgatacacatatatgtatgtgtatccACAACTTTCATTTATGTCAATGTTTATAATACTTGGTAGCCTATAGCAATTTATGCATATTTTGCAGTAAGTCTTTTGAATGGCGTTTGTGCCGTTTATTAGCGTCCATTCCTTTGCAGTTTGACAGCAGGCGACGAGACCAGTAGTTGTAGTTGCAGCACACTTATGACCCGGCTGCCCTTTGTGCCAGGCCGTGTAACGCTGGTGTAACGCTGGTGTAACGCTGGTGTGTGCCTGTGAGAGATAGAGAAACACGCACAGAGTCGCCTCTTTGTACAGTAGCTGCTTCCTACGCCTGTCCAGCGGCATCTTGGTGTGGACCTGGAACAGGCCTGTTTAACGCCGGCATGACCTCTCAACGGGACCCAGAGACGgTGAACCTGCGGCTTATTCTGGTCAGCGGCAAGACTAAGGACTTCACCTTCTGCCCAAATGACTCCGCCACGGACATCGCCAAACATGTCTATGACAACTGGCCCATGGACTGGGAGGAGGAGCAGGTCAGCAGCCCCAGCATCCTGCGGCTCATCTACCAGGGCCGCTTCCTGCACGGCAATGTCACGCTGGGAGCTTTGAAGCTTCCCCCGGGAAGAACAACCGTCATGCACCTGGTTGCACGGGAAACGCTCCCTGAGCCGAACTCTCATGGTCAGAGGAATCGTGAGAAGACTACAGAGAGCAGCTGCTGTCTGCTTTTGTAAACCCatcccctccctcctctccttccttcctCCACACACCTTCCCCCTCCCCCGGCCTCCTCACCACCCACCCTGTCCTCCCCTTCATCCTCCCtttctttaacaaaacaaaacgacaaaACATACACCAGGATCCAGGGGGGTTAAACACTGGACACTTCTTACCCAATTTTTTGTGCCAATCAACCACCTTGTCTGCCTGCCAAACTGTGTGCCAAACTGCACCTGGAGCAGTCAGTAACTGAGTAAAGGAGGTATGGGGTAAATAAAGTACCAGTGTGGCCTGGGAGAGAAGAGATGGGAGCTGGCAGGTCAGCAACCCTGCATGGAAACTGGGCATCCTGGTCTTGATACAGCAGCTGAGTGCAGAGGGGGCTGCCTTTGTGGTGGTTTCCTGGCATGGTATTTAACCTCCCAGTGGACTCTGCTCTCCTCTGCCTGTCTGGAAGCTGCATTGCCTCGCTGCCCCTAGCTGTGTCTCCTGAGGAGCAGCTCTGACCTGGACACGCTTCCCTGCCGTGTCCTGCAGACTGCACAGACTGttcctgcctctctccctctccttctcctgaaccctattgtttttgtctttattccTCTGTCTTGTCCCTCTGttgtcttcctgtctctctctctctctctctctccaacccCCCCCTCTAGTTGTGAAACATGATCTTAAAGAAGGCTGGCTCCCTGTGCCCGGGGCATGGCTGTGTTGGTGGCCAGGGTGGTTGCAGCAGCACTGTGTCTCTGGTGTAAAGGTCAATGTGTTGGACACAGACAGACTCCACCCCTGGCTCGGTCACAGTCTAGGAGAACAACCAATGAGACTCTTTGCCATGTGACTGGGGGGGTGACCATGGGTCAAGAAGCAAAGTGCCCCCCCGCACCACCCTCCTCTGCCTGTACCCCTCCGCCATGTGGAGTTGATGCACACCAGCTCCAGATCAATTACTGCTCTTGCACAGGAACACAGGTTTGGAAAGGGAATCATCACTACTGTACTCCACGTACCATTTCATTACCATTTCATTATTagtaatattcaatattttttaaatgtggggCTTAACTGAGCCAAATTCCTGGGAAGCACCTGTCTTAGTGCTGCAGAGCTAAAttgcaaattcatttttttttggggggggttttCCCTTCCAAAGTGTATTCAGGGAGGCAAGACTGTACCTTGTAACCCCACCAACGTTTTCTTAATATGCgtttttcttctgtgtgtgccagtgtcacGACTCTTTAACTTGTATTGAATTGAACCTGCTTCCAgctggtggggggtgggtgatGGCACAGAATTCCCACTTAGGGCTTGTCAAGAGGTGTTGTCCTCCCAGGGTGAACCTCCAGAGAGCCTGTGGCTAAAAATCTAACCAGTCCATGGTCACACCGAGGGTGCGTGAGGCCTCTGCACTTCCCAACTCTGCTCGCACAGGCCACACTTCTCCTGTGTTGCCTTGcctggcttttgtttttatttccttttcttgatttattttttaactgtgcAAGAGCTGCACTAAAAAAAATTAGTTGCGTGGTCTGAGAGTTGGGATGAGGAAGCTGCTTCGGACAGCTGTGAAATAATGTGAAAGTGGTGAAGAAAGCAAAAGGAGTCCTTCAGGCTGAACCCCCACACTTTGCCGTCGCCGCAGTCGGTGCCCATTCACTGCGGAATTAAACACTACTGTAACAGTCACACTGGATGGCAGGATTGGCATTACCTGAGAACGCTGGCGTGTACCGGGATATGTGCATACAGGCATCCTCTCTTCCTGATGAAGGGGATGAtggagatgtttttgttttgggtcctttttgtttttgatacaAGCTCGGTGAAGGGCTTGGCAGCATGCATTGACTGCCCCGATTGTCTCCgcctcctgtgtgtgtgtctgtgtggacaCTGCTCCACTGAGGGTGGGTCCTGGGGTGGAcagacacccccccacccccgggcCATGTCACCGCAGCATAAAGGAAGCGTCTATATCGGTGTTGCAAAATAACACTTTACACAATAGAGGATTGCATTGGCtggatttagttttaaaatgaaatgcactcTAACTTGGACTTTTAGCCATGGCTTTGTAAATTCCCACGGTGCCAGGCCCCTTTGGGTTCTGCAGCTGTGCCAGGTGCCGATTCTCTGTGCCCCAGCGCAAGCGAGAGACTGCCAGCACTGCAGCAGGGAACacttacacaaaatattaaatgatgGAAGTGGGGACATCTGTGGAGGTGTGCCAGTGTTTGCACCTCTGGTGTTTGTatgctgtctttgtttttcttttaaatgtggaaatattaatatgaattctAAATGGaaattttatcattttttgtgttgtgtatatttTACTACTAAAAGTATGAAATTATTCTTTAACAGATCATAACAAAACTGGACTTACTCCCCCTGGTTTAGTCTGGAATTTGTGAAAAGCggttgccttttattttaattttttttgccaCTTTTACCAGAGAGggggaaataaatcaattttatgaCGCTTGCTGCGACCAGCCGTCCTTAAATAACAAAAGAGTTGTTGGTAAATTAGTGCCAGTTGATGACACTGCTAACAGTTTGTgcttaagtaaatacataacttaaaatgtaaagtataaaaTGGTCTGCTTAAAGcttatattataaattaataaaaagtttaaaaattaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106784 lncRNA upstream 140778 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 308067 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 486981 15575549 ~ 15576518 (+) True G85497
TU106625 lncRNA upstream 496673 15515453 ~ 15566826 (+) True G85426
TU106874 lncRNA downstream 66902 16140523 ~ 16169886 (+) True G85623
TU106936 lncRNA downstream 216128 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 474036 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 495826 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 498572 16572193 ~ 16572868 (+) True G85758
AMCG00021375 mRNA upstream 4171 16048516 ~ 16059328 (+) True AMCG00021375
AMCG00021372 mRNA upstream 25715 16022358 ~ 16037784 (+) True AMCG00021372
AMCG00021374 mRNA upstream 46579 16011194 ~ 16016920 (+) True AMCG00021374
AMCG00021370 mRNA upstream 75887 15981081 ~ 15987612 (+) True AMCG00021370
AMCG00021367 mRNA upstream 124199 15935436 ~ 15939300 (+) True AMCG00021367
AMCG00021384 mRNA downstream 29352 16102973 ~ 16103209 (+) True AMCG00021384
AMCG00021383 mRNA downstream 32877 16106498 ~ 16107682 (+) True AMCG00021383
AMCG00021381 mRNA downstream 36795 16110416 ~ 16110859 (+) True AMCG00021381
AMCG00021379 mRNA downstream 37687 16111308 ~ 16113420 (+) True AMCG00021379
AMCG00021377 mRNA downstream 51900 16125521 ~ 16131258 (+) True AMCG00021377
TU105723 other upstream 3962792 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5076325 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6640080 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7430089 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8942262 7115381 ~ 7121237 (+) False AMCG00021150
TU107049 other downstream 516560 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 583023 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 583023 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 924256 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 2174869 18248490 ~ 18249686 (+) True G86121

Expression Profile