RNA id: TU106850


Basic Information

Item Value
RNA id TU106850
length 4111
RNA type TUCP
GC content 0.46
exon number 5
gene id AMCG00021373
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16063499 ~ 16073621 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGTCTTTAAATCGTCTGCCATTAAGTCTGTCCGGgctatgtttgtgtgttttcaggcGGAGAAAAGCGATACAAACGGTGGGATCCTTGACCGAAACTGGAATTATGAATTTATAGATTTTATATTCATTCAACCGATAGAAAATAAACGACTGTTCTGTCTCGGGTAGTCTCGCATTAATtcgaaaaaaaacatttttttggtgTTATGTACCCGCGTTACGGTTCCCTTTTCCTGCAGTCCTGGAAAATGCACCCGGGTTTACACTTGTCGTTCTTCTGCTTGAAACGGAGACAGGTTAATAGACTcgattgttcttatttttaaaaatacacatttaaatctatataaatgtaactatcgatatatatatatatatatatatatatataacaagaaaGGAAGTGACGTATTCATAGTTCTATATAGCACCcacatagatatatacatacatacatggtgATAGTATTATTGTAATAACTAAGAAAAACTTGCACATGCTTCCAGGAACTTCGTGGTTTCGATTCTGTAAGATACGTTTTTGTTGcgtttatgtttacattttaaataagaatatatgtatagaataaatgtgtataatacataaaaacgtATTTATTCTTTTAGACTGGGACAACACCATTTCGAACTAGTAGAGTCTGGGACTTAAtgatacacatatatgtatgtgtatccACAACTTTCATTTATGTCAATGTTTATAATACTTGGTAGCCTATAGCAATTTATGCATATTTTGCAGTAAGTCTTTTGAATGGCGTTTGTGCCGTTTATTAGCGTCCATTCCTTTGCAGTTTGACAGCAGGCGACGAGACCAGTAGTTGTAGTTGCAGCACACTTATGACCCGGCTGCCCTTTGTGCCAGGCCGTGTAACGCTGGTGTAACGCTGGTGTAACGCTGGTGTGTGCCTGTGAGAGATAGAGAAACACGCACAGAGTCGCCTCTTTGTACAGTAGCTGCTTCCTACGCCTGTCCAGCGGCATCTTGGTGTGGACCTGGAACAGGCCTGTTTAACGCCGGCATGACCTCTCAACGGGACCCAGAGACGgTGAACCTGCGGCTTATTCTGGTCAGCGGCAAGACTAAGGACTTCACCTTCTGCCCAAATGACTCCGCCACGGACATCGCCAAACATGTCTATGACAACTGGCCCATGGACTGGGAGGAGGAGCAGGTCAGCAGCCCCAGCATCCTGCGGCTCATCTACCAGGGCCGCTTCCTGCACGGCAATGTCACGCTGGGAGCTTTGAAGCTTCCCCCGGGAAGAACAACCGTCATGCACCTGGTTGCACGGGAAACGCTCCCTGAGCCGAACTCTCATGGTCAGAGGAATCGTGAGAAGACTACAGAGAGCAGCTGCTGTCTGCTTTTGTAAACCCatcccctccctcctctccttccttcctCCACACACCTTCCCCCTCCCCCGGCCTCCTCACCACCCACCCTGTCCTCCCCTTCATCCTCCCtttctttaacaaaacaaaacgacaaaACATACACCAGGATCCAGGGGGGTTAAACACTGGACACTTCTTACCCAATTTTTTGTGCCAATCAACCACCTTGTCTGCCTGCCAAACTGTGTGCCAAACTGCACCTGGAGCAGTCAGTAACTGAGTAAAGGAGGTATGGGGTAAATAAAGTACCAGTGTGGCCTGGGAGAGAAGAGATGGGAGCTGGCAGGTCAGCAACCCTGCATGGAAACTGGGCATCCTGGTCTTGATACAGCAGCTGAGTGCAGAGGGGGCTGCCTTTGTGGTGGTTTCCTGGCATGGTATTTAACCTCCCAGTGGACTCTGCTCTCCTCTGCCTGTCTGGAAGCTGCATTGCCTCGCTGCCCCTAGCTGTGTCTCCTGAGGAGCAGCTCTGACCTGGACACGCTTCCCTGCCGTGTCCTGCAGACTGCACAGACTGttcctgcctctctccctctccttctcctgaaccctattgtttttgtctttattccTCTGTCTTGTCCCTCTGttgtcttcctgtctctctctctctctctctctccaacccCCCCCTCTAGTTGTGAAACATGATCTTAAAGAAGGCTGGCTCCCTGTGCCCGGGGCATGGCTGTGTTGGTGGCCAGGGTGGTTGCAGCAGCACTGTGTCTCTGGTGTAAAGGTCAATGTGTTGGACACAGACAGACTCCACCCCTGGCTCGGTCACAGTCTAGGAGAACAACCAATGAGACTCTTTGCCATGTGACTGGGGGGGTGACCATGGGTCAAGAAGCAAAGTGCCCCCCCGCACCACCCTCCTCTGCCTGTACCCCTCCGCCATGTGGAGTTGATGCACACCAGCTCCAGATCAATTACTGCTCTTGCACAGGAACACAGGTTTGGAAAGGGAATCATCACTACTGTACTCCACGTACCATTTCATTACCATTTCATTATTagtaatattcaatattttttaaatgtggggCTTAACTGAGCCAAATTCCTGGGAAGCACCTGTCTTAGTGCTGCAGAGCTAAAttgcaaattcatttttttttggggggggttttCCCTTCCAAAGTGTATTCAGGGAGGCAAGACTGTACCTTGTAACCCCACCAACGTTTTCTTAATATGCgtttttcttctgtgtgtgccagtgtcacGACTCTTTAACTTGTATTGAATTGAACCTGCTTCCAgctggtggggggtgggtgatGGCACAGAATTCCCACTTAGGGCTTGTCAAGAGGTGTTGTCCTCCCAGGGTGAACCTCCAGAGAGCCTGTGGCTAAAAATCTAACCAGTCCATGGTCACACCGAGGGTGCGTGAGGCCTCTGCACTTCCCAACTCTGCTCGCACAGGCCACACTTCTCCTGTGTTGCCTTGcctggcttttgtttttatttccttttcttgatttattttttaactgtgcAAGAGCTGCACTAAAAAAAATTAGTTGCGTGGTCTGAGAGTTGGGATGAGGAAGCTGCTTCGGACAGCTGTGAAATAATGTGAAAGTGGTGAAGAAAGCAAAAGGAGTCCTTCAGGCTGAACCCCCACACTTTGCCGTCGCCGCAGTCGGTGCCCATTCACTGCGGAATTAAACACTACTGTAACAGTCACACTGGATGGCAGGATTGGCATTACCTGAGAACGCTGGCGTGTACCGGGATATGTGCATACAGGCATCCTCTCTTCCTGATGAAGGGGATGAtggagatgtttttgttttgggtcctttttgtttttgatacaAGCTCGGTGAAGGGCTTGGCAGCATGCATTGACTGCCCCGATTGTCTCCgcctcctgtgtgtgtgtctgtgtggacaCTGCTCCACTGAGGGTGGGTCCTGGGGTGGAcagacacccccccacccccgggcCATGTCACCGCAGCATAAAGGAAGCGTCTATATCGGTGTTGCAAAATAACACTTTACACAATAGAGGATTGCATTGGCtggatttagttttaaaatgaaatgcactcTAACTTGGACTTTTAGCCATGGCTTTGTAAATTCCCACGGTGCCAGGCCCCTTTGGGTTCTGCAGCTGTGCCAGGTGCCGATTCTCTGTGCCCCAGCGCAAGCGAGAGACTGCCAGCACTGCAGCAGGGAACacttacacaaaatattaaatgatgGAAGTGGGGACATCTGTGGAGGTGTGCCAGTGTTTGCACCTCTGGTGTTTGTatgctgtctttgtttttcttttaaatgtggaaatattaatatgaattctAAATGGaaattttatcattttttgtgttgtgtatatttTACTACTAAAAGTATGAAATTATTCTTTAACAGATCATAACAAAACTGGACTTACTCCCCCTGGTTTAGTCTGGAATTTGTGAAAAGCggttgccttttattttaattttttttgccaCTTTTACCAGAGAGggggaaataaatcaattttatgaCGCTTGCTGCGACCAGCCGTCCTTAAATAACAAAAGAGTTGTTGGTAAATTAGTGCCAGTTGATGACACTGCTAACAGTTTGTgcttaagtaaatacataacttaaaatgtaaagtataaaaTGGTCTGCTTAAAGcttatattataaattaataaaaagtttaaaaattaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106784 lncRNA upstream 140879 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 308168 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 487082 15575549 ~ 15576518 (+) True G85497
TU106624 lncRNA upstream 496774 15446311 ~ 15566826 (+) False G85426
TU106625 lncRNA upstream 496774 15515453 ~ 15566826 (+) True G85426
TU106874 lncRNA downstream 66905 16140523 ~ 16169886 (+) True G85623
TU106936 lncRNA downstream 216131 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 474039 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 495829 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 498575 16572193 ~ 16572868 (+) True G85758
AMCG00021375 mRNA upstream 4272 16048516 ~ 16059328 (+) True AMCG00021375
AMCG00021372 mRNA upstream 25816 16022358 ~ 16037784 (+) True AMCG00021372
AMCG00021374 mRNA upstream 46680 16011194 ~ 16016920 (+) True AMCG00021374
AMCG00021370 mRNA upstream 75988 15981081 ~ 15987612 (+) True AMCG00021370
AMCG00021367 mRNA upstream 124300 15935436 ~ 15939300 (+) True AMCG00021367
AMCG00021384 mRNA downstream 29355 16102973 ~ 16103209 (+) True AMCG00021384
AMCG00021383 mRNA downstream 32880 16106498 ~ 16107682 (+) True AMCG00021383
AMCG00021381 mRNA downstream 36798 16110416 ~ 16110859 (+) True AMCG00021381
AMCG00021379 mRNA downstream 37690 16111308 ~ 16113420 (+) True AMCG00021379
AMCG00021377 mRNA downstream 51903 16125521 ~ 16131258 (+) True AMCG00021377
TU105723 other upstream 3962893 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5076426 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6640181 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7430190 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 8942363 7115381 ~ 7121237 (+) False AMCG00021150
TU107049 other downstream 516563 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 583026 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 583026 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 924259 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 2174872 18248490 ~ 18249686 (+) True G86121

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU8769 True 2269 TUCP 0.45 3 CI01000000 10404328 ~ 10414513 (-)