RNA id: AMCG00021380


Basic Information

Item Value
RNA id AMCG00021380
length 1869
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00021380
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16176362 ~ 16181822 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACACCAGCAGTACACTTGACAGTTGCCCTGAACAGGCTGTCAAATCGTCGTCTCCAACAGCAGCTCTGGGAAGGCAGAACAATGCCAGTGAGAGAGTGGGATGCAGCATTACTAGCACTGGTCCTCTTGGGCACACCGCACAGCTCTGCGGGCAAAGGGCACTGATGCCACTCACAGTCAGACGGGACTTATTTCACGTCATTTTATGAATGAAAAACTGCTCACACACAGTGGCCAAGTGCTGTGACTCGTCAGCTGTCTCTTTGCTCAGGTTGGACTgcagccccccgcccccctttTGGAAGACAGACTATCTAGCCCTCAAGATAAAACCCAACAGCTGtgcgggagagagggagggaaccGGTCTATTTTTATCCTTCACTCGACCTGGCATCACAGTGTGCGTCCCTGTCATATACCCCCTACCCCCACGCCTGTCCTCGTCTTCTCTAGCAAGTCTGGGTGGAAAcgtcgagagagagagagagagacggacccCGGAGGCGATTAGTTTTAAACGGGACTGGCCTGCTGGGGATTGcacaggagggagaggagaccGACAGGGAGAAGGCGCAGTAGCTGAGATTTGCCGAGCGGAGCGACGGGGGAAAACGCCGGTACAGACGGGAGAGGCATGGAGCTGCTGTGTTACAACAAGGGCTGCGGGGAGCGCTTCACAGCCCAGAGCAACTCTGACGACGCTTGTCTTCATCACCCGGGTGTCCCAATATTCCACGATGCTCTGAAGGGCTGGTCGTGCTGCAAGAAGAAGACCACTGACTTCTCCGAGTTCCTGTCCATAAAGGGTTGCACCCGCGGCCGCCACAGCAATGAGAAGCCCCAGGAGACTTTGCAGCCCGAGGTGACGTCTGACAAAGCGAACGGCTCCCGACTCCAAGCTGAGGATAAGGTCATCCTCCGGGAGCCCAAGTCTGCCGAggccctgcagagagagaggcccAGTTCGGACGAGCCCAAGACCAAACTGCCGGTCAGGGTGTCGCAGTCTCTCGCGCAGGCCCTGGAGAAGCTCAGTCTCTCGGAGATGCAGAAGAAAAAGGAGCAAGAGAGCCAAGCTGTGATGCCCGGCACGAGGTGCAAGAACGCTGGCTGCAAGACGGTCTACAGTGGCCCGGAGACGGATGGCGAGACCTGCCTGCACCATCCCGGGGTGCCCGTTTTCCATGAGGGCTTTAAATACTGGAACTGCTGCTGCATCAGAACCACAGACTTCAATGCTTTCCTGGATCAGAAGGGCTGCAGTACAGGGAAGCACACCTGGGTCCCCAAACAGATGACAGTTCACATCCAGTTCGAGAGCGATAAACTCTTTCACAAGGATTTTCACCTCTGGGGGGTGGCCAGTGTGGAACAGAGCTTTGTGAACATGGTGCCCAGCAAGGTGGAGGTGACCCTTGTTAAGGCCGACCCTGTGTCCTGGGCCAAGCTGGAAGACCCTCGCGCCCACGTGGAGCTGGCCGAAGGACTGCAGGAGAGCGAGGAGAGCGAAGATGTGCGGCCTGACTGGGACATCTCCGACGATGACATCAGCGAGTCCGATGAGGAGTTTCAGTAGCGGCGCCGCCTGCCTCTTCATTTCTGCTGtggctttttctctttcttttatcttagtttttattcagatttttcctcttttctttcttttctacaAACACACTTTACTCCTTTCTGTTGCACGGGCATattctgagaaaaacaaaggaagaaatgttaatgtgatatattgtaacaattgtaagtcaccctggataagggcatctgctaagaaatgtaatgtaatataatacaataaaaagaaacaagttGCCCTGAAACACCTGTGCATCTTCTAAGTATATC

Function

GO: NA

KEGG:

id description
K16729 CHORDC1, CHP1; cysteine and histidine-rich domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106874 lncRNA upstream 6476 16140523 ~ 16169886 (+) True G85623
TU106784 lncRNA upstream 253641 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 420930 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 599844 15575549 ~ 15576518 (+) True G85497
TU106625 lncRNA upstream 609536 15515453 ~ 15566826 (+) True G85426
TU106936 lncRNA downstream 107927 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 365835 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 387625 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 390371 16572193 ~ 16572868 (+) True G85758
TU107044 lncRNA downstream 402495 16584317 ~ 16584765 (+) True G85760
AMCG00021378 mRNA upstream 10202 16138851 ~ 16166160 (+) True AMCG00021378
AMCG00021377 mRNA upstream 45104 16125521 ~ 16131258 (+) True AMCG00021377
AMCG00021379 mRNA upstream 62942 16111308 ~ 16113420 (+) True AMCG00021379
AMCG00021381 mRNA upstream 65503 16110416 ~ 16110859 (+) True AMCG00021381
AMCG00021383 mRNA upstream 68680 16106498 ~ 16107682 (+) True AMCG00021383
AMCG00021390 mRNA downstream 2001 16183823 ~ 16184805 (+) True AMCG00021390
AMCG00021391 mRNA downstream 18123 16199945 ~ 16202371 (+) True AMCG00021391
AMCG00021385 mRNA downstream 41082 16222904 ~ 16232810 (+) True AMCG00021385
AMCG00021386 mRNA downstream 74643 16256465 ~ 16270872 (+) True AMCG00021386
AMCG00021389 mRNA downstream 106932 16288754 ~ 16289608 (+) True AMCG00021389
TU106850 other upstream 102744 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4075655 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5189188 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6752943 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7542952 8631727 ~ 8633410 (+) True G84301
TU107049 other downstream 408359 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 474822 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 474822 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 816055 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 2066668 18248490 ~ 18249686 (+) True G86121

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU162073 True 1036 lncRNA 0.42 1 NC_047602.1 22592233 ~ 22593268 (+)