RNA id: AMCG00021385


Basic Information

Item Value
RNA id AMCG00021385
length 4145
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00021385
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16222904 ~ 16232810 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCGGTTTCCGGTTTCGGCGCAATTCAGGTGCAATAGACGGCGAGGGGATCCTCCgccgtttttatttatttattattgccGTCGTGGTGGCTGTAATGGGGAATATAGTTCACTAACCAGCAGCTCCCTATTCGGCACAGGTCTGCAGCCGGTGGAGGCGGCTCCCAGCGAAATGGCCAATCTGAACTGGAAACCGTTCATCTACGGAGGGCTGGCCTCGATCGTGGCGGAGTTCGGCACCTTCCCGATCGACCTAACAAAGACGCGCCTGCAGGTGCAGGGCCAGGCGCACTACCAGGAGATCCGCTACAGAGGCATGTTCCACGCGCTGCTGCGCATCGGCCGCGAGGAGGGCGTGCTCGCGCTGTACTCGGGGATTTCCCCGGCGCTCTTGCGGCAGGCTTCTTACGGGACCATTAAGATTGGCACCTACCAGACCTTGAAGAGACTGTTCGTGAGCCGTCCTGAAGATGAGACCATGGTGATCAATGTGTTTTGTGGAGTCGTCTCGGGAGTCCTGTCATCCTCTATAGCCAATCCCACAGACGTGCTGAAGATCCGGATGCAGGCCCAGGGCAGCCTCCTGCAGGGCAGCATGATGGCAAACTTCATCGATATCTACCAGCAGGAGGGCACGCGCGGGCTGTGGAGGGGAGTCATCCCCACAGCGCAGAgggcagccattgtggtgggCGTAGAGCTTCCCGTCTATGACATCACCAAGAAACACCTCATCCTGTCCGGCATCATGGGTGACACCATCTACACACACTTCGTCTCCAGCTTCACATGTGGGCTGGCAGGGGCTCTGGCCTCGAACCCAGTGGACGTGGTACGGACACGCATGATGAACCAGCGTGTGCTTGCAGGCAACCCCCTGTACAAGGGCACACTGGACGGGCTGCTGCAGACCTGGCGCAATGAGGGCTTCTTTGCGCTCTACAAAGGATTCTGGCCCAACTGGCTGAGGCTCGGGCCCTGGAACATCATCTTCTTCATCACCTACGAGCAGTTGAAGAAGCTCCAGTTGTAGCTGTCTGGTGGACGCCCCACAGTGACGCCCGAGGGCTGGGAGGGGGGTGAAGTGGTGTGCTGCCCTCTGGCCCTCACCCACGCGCACTGCTCCAGACCTCCCCACGGCCCAGCCCCCGCTCTCGTTTCTATTTGTGTCTATCCGTACATACATGCAGTCCAGCTCgggatccatttatttattttaatatttatttgtcccccccacaccccctatacttgttttatttgcacTCCACTTCCCCCCCCtcgcttcctcctcctcctcctcctttcctTACCCTCTTGCGGCAGCTAAAACTTTGAGTTTATAGTAAGAAAGTGTTACTTGCCCTCTGCTTGAAGTTGCAGTTGTGTTTCATgcggagaggagagaggagaacgcggacactgttttttttttttttctcaaacgaGAGTGTTAACGATGCTGGATGCTGCAAGGCTTGGTTATCTAGATGATTTTATTGAtatgttttatcattatttatttaaatattttttgcagtggTGCCAATAGCCCCTACTGCTTActtgaaattgtgtgtgttggtgtgttcATGCTCGAACTGTGCATTCCCACCGGATGTTAATGCTAGGGTGCCTTCTGCAGACAAGTGTCTATGCCCCTTCGCTATGGTTTGTGCAGGGTTTTGCTGGAGCTGGCGCCCCCTACTGACCTTCCCTGGGCTTAACAGGTCCCTGCTCTACCCTGCTAGACTGACCTGGCGCTGTGGTTCGAGAATTCGTAGTTCCTTGCTCTGAAATGCGTCTCTTGTGgccacaacacactgacactctcactCATACACACTCGCACTCagtcacacacccacacacaactTTGACTGGAAATCAAAGTACTGAGGGCACAGCGCTGTGGCATAGGTGCTTCCCCCGAGTGCCAAATTATTGTCTGTCTTTTATTGTTTCAAAGTGTTTAGATCCATTGAGCAGAGGGTTGGAGGCTCGCAGTCGGGTCTGGCAGGCTTCTCGCCATTGCCAGTGTCGGCCTTAAGGGTCTTTCACACCAGACGCGGTGTGGCATTGCTGCATGGCAGATCCCATTGAAATAAAGGTAGACGAGAGCGCCGTGGCAGAGGGGTGGAGTTATATCTATAAGATAACTGTCCATACAATTCAAATCCATTTAAGTTTCAACTTGCAGAAGCCAATATAGTCCGAAAAGTGATGTGCTATTGAGCTTGATAAGGGAGGTTTTCAGAATTGCAGTTTGCTTCGATAATGGAAGAGTTAAAGAAACATTTGCTTGATATTATAATGtaagcaatattttaaaataataaaaaagtattatgtaGCCTCAAATGTTTCGTTCTGAAAGTGACAGAGCTGTGGTTAAATTGTAGACATCCTTACCTTAAATCATTCCTGGTTGCAATTCATAGTACAATTAAAgctcaatttaaataaatagcataatattattcatattaatgcaCCATGATGCTCTCTGACCATACCCAGCAAATGACACAGAACTCGCATATGtataacatatacaaataaatgtattataaacaaacacacaattggCTACATTAAGTTATTTTAGGTTATTTTGTAGGGGAGGAGTtagggtttaaaaatatttatgtaggtctctattttgtgtaaaataaaggtTAGGCTCTTCTCCCCTCTGATGTAATTTCATGATTTTTGCCTGGCAATCAAAAGTCATACTGCTTTGAAGAGCCTGCACACCGACTGCCCTGCCACGTCCGCTACGCGTTCGGTGTGAAAGCACCTTTACTGTTAttatgtcttttatttattaaaaaataatagcactttttttaaaccactaggtttttaataatttgcctGACTCTGGCAACGTCTGTGGCATGATCTGCTGTCACTGTCATGACTGTCTGAAGGAGAAAAGAACAAAGAGGAAAGCAAAGGAGTGTCTGTGGTGCCGTGCAGGACTGTGCTCTGGTAATGGGGTTTGCAGGTGTGCCCCTGACCTGGACACAGTGGCCACTAGTGCTGATCACTTGACaacatgtaaaatgtgtctttgttaTCACAGATGCAAAAGTGAGGggcttattgtttttattattattttttaattataattattttccatatttatttatttttacaaatcatACGGTTCATTCAGttccatttagatttttttttttttaatcatctttCTGGgagctgtttttacatttgacaaTTCAAGCTTCGACTGATCAAATCTGCGGAGGTTGCATTCAATATTTGAAGGACAGATATAAATTCTTCTGCTCAGATTTAATGCATGCAGCATTTCCGTAGTGCCGATGGGTGATGGATTTTGAAATCCAGTCACCCTAGCTGCAGTGACAGCGTAGGGGCTCCTGGATCGCTCTCAGGCTTTCATTTGCTGTGTTGGTGTTTCGTGGAGAGCCCCATTGTGCTCTTGATGTCACCCTTAACTGAAAAAACGAGACTCAACAGGTTTGTTCGCACGATCTGTACCACGTTCACATGcctttggtaaaaaaaaaaaaaaatgatggggGAAAAAGGTCTGGTacaagatttaatttgtttatttatgacacttatttttttgtatgtttacctCCTAAGTTCAAAGCGAATCACGTGAATACTAACAGAACCTAACAGGGTGCCAGCTATGCAGCACAAGAACGATCTTTCATCTTTGGGTCATAAGGAAACAAACTATTGGAGCCAAAGCTAAAATGACAGTCCAAGCCCTGTGTACATGATACATTGTTAAACACTTGATTGTCACTGCTGAACatgctttatttataaatctgattcatttaaattattattatagtcattattattattgcttatgATATGCTGGTCTGTTACTTCTTTGGTCAGTCAAgggaaatgtgttaaatttcaaatgcatttgcactTTTGTGTTGTATCCGTGGTGGttatgttgttaaaaaaaatgcatttcaaaataaaacaaatcaaagtatTGCAGCTCTTTAATTACAGCAATTAATTGGTTTCCCACAAGGAGCACAATCAGGCTTTTTAAAGGGTATGTGTACACTGCACTCTGAAATCTTACttcaatacatcaataaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006839 mitochondrial transport biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15106 SLC25A14_30; solute carrier family 25 (mitochondrial carrier), member 14/30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106874 lncRNA upstream 53018 16140523 ~ 16169886 (+) True G85623
TU106784 lncRNA upstream 300183 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 467472 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 646386 15575549 ~ 15576518 (+) True G85497
TU106656 lncRNA upstream 659987 15561745 ~ 15562917 (+) True G85455
TU106936 lncRNA downstream 56939 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 314847 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 336637 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 339383 16572193 ~ 16572868 (+) True G85758
TU107044 lncRNA downstream 351507 16584317 ~ 16584765 (+) True G85760
AMCG00021391 mRNA upstream 20533 16199945 ~ 16202371 (+) True AMCG00021391
AMCG00021390 mRNA upstream 38099 16183823 ~ 16184805 (+) True AMCG00021390
AMCG00021380 mRNA upstream 41082 16176362 ~ 16181822 (+) True AMCG00021380
AMCG00021378 mRNA upstream 56744 16138851 ~ 16166160 (+) True AMCG00021378
AMCG00021377 mRNA upstream 91646 16125521 ~ 16131258 (+) True AMCG00021377
AMCG00021386 mRNA downstream 23655 16256465 ~ 16270872 (+) True AMCG00021386
AMCG00021389 mRNA downstream 55944 16288754 ~ 16289608 (+) True AMCG00021389
AMCG00021395 mRNA downstream 185413 16418223 ~ 16434076 (+) True AMCG00021395
AMCG00021394 mRNA downstream 233897 16466707 ~ 16471856 (+) True AMCG00021394
AMCG00021397 mRNA downstream 241973 16474783 ~ 16499645 (+) True AMCG00021397
TU106850 other upstream 149286 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4122197 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5235730 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6799485 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7589494 8631727 ~ 8633410 (+) True G84301
TU107049 other downstream 357371 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 423834 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 423834 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 765067 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 2015680 18248490 ~ 18249686 (+) True G86121

Expression Profile