RNA id: AMCG00021388


Basic Information

Item Value
RNA id AMCG00021388
length 1155
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00021388
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16209738 ~ 16212465 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACAAGGAatctaaataattacataatctCTATTTATCCGACAGCTGATAGTGTGTTAATCTGTCTCTGGCAATgtcacattctctctctctccccacttccacacctccctcctcttcctctttcttcCTCCCAGTCCCCTGACGAAAGTGAAGCTGATCAATGAACTGAACCAGCGTGAGGCGGAGCTGGGGGTGAAAGAGACGGTGTCATGGCACTCCGAGTACAAGGACAGTGCCTGGATCTTCATAGAGGGAGACCTGCTCTGCATCTTCTCACAGTACGGGGAGATCGCCAACATCAACCTGGTGCGGGACAAGAAGACGGGGAAATCGAAGGGCTTCTGCTTCATTTGCTACGAGGATCAGAGGAGCACCATCCTGGCTGTGGATAACTTCAATGGGATCAAGCTGCGGGAGCAGGGCTGTGCCCCTAggacaccccccccaccctcctccgAGTCTGAGGAGGGGGAGTACACTGTGCCCgtgaagaagcagaagaaagAGAAACAGGACCTGGGGTACGAGAAATATGCCAGTCACCCTGAGGACAGGCCCGCCCGGGGGGACAGACGCAGAGACGAGGAGCTCCGGCccggaggagagaggggggaggacAGGGTGCCCAGAGGCCCTCCAGAGGACAGAGGCCGTGAAgccagagggagggagagagagagaaacagcgACCCCTGGGGCAGGGATGAGGAgagggggggtggagagggCAGCAGCAGATGGAGAGAGGGGCAGGACAACGGAGGTGCGAGGGACCGGGGGCGAGACCACGATGCCCCACCGTTTCCCCGGGACAGGAGGGACGAGAGGCAGAGTAGACCCGACGGACGTGGCCGAGAACGGGCCCAGGCCACGGAGAGAGACCGGGACAGAGAGATGAGGAGAGACTGGGacgcagacagagagagggggagagaccGGGACGTTGACAGAGACCGAGATAAAGTGAGAGAGCGGGACCcagacagggacagagggagagagcgggACGTGGACAGAGActgggacagagggagagaacgGGCTGCAGACAGAGActgggacagagggagagagcgggATGCAGACAGAGACCGGGACAGACCTGTCAAACATAAGGAGCACAGCCGGGACCCTGAGCATAGGAGGAACTGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13107 RBMX2, IST3; RNA-binding motif protein, X-linked 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106818 lncRNA downstream 188996 15976565 ~ 16020742 (-) False G85580
TU106917 lncRNA upstream 53544 16266009 ~ 16266798 (-) False G85658
TU106982 lncRNA upstream 259087 16471552 ~ 16471759 (-) True G85716
TU107056 lncRNA upstream 353252 16565717 ~ 16566021 (-) True G85771
TU107100 lncRNA upstream 479102 16691567 ~ 16757611 (-) True G85802
TU107125 lncRNA upstream 595341 16807806 ~ 16809320 (-) True G85824
AMCG00021382 mRNA downstream 88146 16120188 ~ 16121592 (-) True AMCG00021382
AMCG00021376 mRNA downstream 201659 16002219 ~ 16008079 (-) True AMCG00021376
AMCG00021364 mRNA downstream 339208 15862894 ~ 15870530 (-) True AMCG00021364
AMCG00021355 mRNA downstream 674604 15528669 ~ 15535134 (-) True AMCG00021355
AMCG00021357 mRNA downstream 683555 15515619 ~ 15526183 (-) True AMCG00021357
AMCG00021392 mRNA upstream 3971 16216436 ~ 16217455 (-) True AMCG00021392
AMCG00021387 mRNA upstream 21852 16234317 ~ 16242423 (-) True AMCG00021387
AMCG00021393 mRNA upstream 144800 16357265 ~ 16359007 (-) True AMCG00021393
AMCG00021396 mRNA upstream 226971 16439436 ~ 16452644 (-) True AMCG00021396
AMCG00021406 mRNA upstream 291276 16503741 ~ 16504379 (-) True AMCG00021406
TU106219 other downstream 2157841 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2291870 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 2581991 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 3408152 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 3682044 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 28539 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 434674 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 434674 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 1086415 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 1207139 17419604 ~ 17423418 (-) True G85953

Expression Profile