RNA id: AMCG00021393


Basic Information

Item Value
RNA id AMCG00021393
length 729
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00021393
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16357265 ~ 16359007 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCATGAACAGCAAGCAGGCGTTCAGTATGCACCCTATTCTGCATGAACCGAAATACACGCCTCTACACTCCAGCTCAGAAGCTATCAGGAGGGCATGCTTGCCAACGCCGTCGCTACAGGGCAACATCTTCGCCGGTTTCGATGAGACTTTGCTGCAGAGAGCGGAGGCGCTGGCGGCGGTGGATATTGTGTCCCAGAAAAGCCACCCTTTTAAGCCGGACGCCACCTACCACACCATGACAAGCATGACCTGCACCCCCACCTCGTCCTCTGCGCACCTGCACCATCCCTCCGTGCTCACCtcgcaccaccaccaccaccaccagccgtCCCAGGGCCTGGAGGGCGACCTGCTGGACCACCTCACCCCAGGCCTGTCTCTGGGTGGCATGGCGGGGCCCGAGTCGCTCACCCTGTCCCACAATAACATGGTGGCCCTGAAACCCATCCTGGAAGCCTGGCTGGAAGAGGCGGAGCGGGCACAGCGGGAGAAGATGACCAAACCCGAGATATTCAACGGCGGGGACAAGAAGCGGAAACGCACGTCCATAGCCGCCCCTGAGAAGCGCTCGCTGGAAGCCTACTTCGCCGTGCAGCCCCGACCCTCCTCCGAGAAGATAGCGGCCATCGCCGAGAAACTGGATCTGAAAAAGAACGTGGTGCGTGTGTGGTTTTGCAACCAGAGACAGAAGCAGAAAAGGATGAAATTTTCCGCAGCGCATTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106916 lncRNA downstream 90467 16179162 ~ 16266798 (-) True G85658
TU106917 lncRNA downstream 90467 16266009 ~ 16266798 (-) False G85658
TU106818 lncRNA downstream 336523 15976565 ~ 16020742 (-) False G85580
TU106982 lncRNA upstream 112545 16471552 ~ 16471759 (-) True G85716
TU107056 lncRNA upstream 206710 16565717 ~ 16566021 (-) True G85771
TU107100 lncRNA upstream 332560 16691567 ~ 16757611 (-) True G85802
TU107125 lncRNA upstream 448799 16807806 ~ 16809320 (-) True G85824
TU107139 lncRNA upstream 463809 16822816 ~ 16823079 (-) True G85837
AMCG00021387 mRNA downstream 114842 16234317 ~ 16242423 (-) True AMCG00021387
AMCG00021392 mRNA downstream 139810 16216436 ~ 16217455 (-) True AMCG00021392
AMCG00021388 mRNA downstream 144800 16209738 ~ 16212465 (-) True AMCG00021388
AMCG00021382 mRNA downstream 235673 16120188 ~ 16121592 (-) True AMCG00021382
AMCG00021376 mRNA downstream 349186 16002219 ~ 16008079 (-) True AMCG00021376
AMCG00021396 mRNA upstream 80429 16439436 ~ 16452644 (-) True AMCG00021396
AMCG00021406 mRNA upstream 144734 16503741 ~ 16504379 (-) True AMCG00021406
AMCG00021404 mRNA upstream 186746 16545753 ~ 16550094 (-) True AMCG00021404
AMCG00021411 mRNA upstream 208132 16567139 ~ 16572494 (-) True AMCG00021411
AMCG00021410 mRNA upstream 222555 16581562 ~ 16590609 (-) True AMCG00021410
TU106928 other downstream 114610 16241004 ~ 16242655 (-) False AMCG00021387
TU106219 other downstream 2305368 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2439397 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 2729518 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 3555679 12719864 ~ 12801586 (-) True AMCG00021259
TU107075 other upstream 288132 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 288132 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 939873 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 1060597 17419604 ~ 17423418 (-) True G85953
TU107350 other upstream 1188155 17547162 ~ 17552766 (-) True G86010

Expression Profile