RNA id: AMCG00021400


Basic Information

Item Value
RNA id AMCG00021400
length 1719
RNA type mRNA
GC content 0.61
exon number 5
gene id AMCG00021400
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16541957 ~ 16545499 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCTCGGGGGGAGAAGGAAGAAATTGGAAGTGTTCGTGGTCAACCCCGCTGACAACCTCTACTACCGCTGGCTGTTCATCATGGCCACCGCTGTGCTGTACAACTGGTGCCTCCTGGTGGCCAGGGCCTGCTTCGATAATCTGCAGACCTCGTGCTTCATCCTCTGGCTGGTCCTGGACTATGTGTCTGACTCCTTCTACATCCTGGACACCTGCGTCCGCCTGCGCACCGGGTTCCTGGAGCAAGGCCTGTTGGTGAAGGACCTGTCCAAGCTGAGCTCAGTGTATGTCCACACCCTGCAGTTCAAGCTGGACGTACTGTCCATCCTGCCCACTGACCTGGCCTACCTAGCCACGGGCATCCACACCCCTGAGCTGCGCTTCAACCGGCTACTCCGCTTCCCCCGCATGTTCGAGTTCTTTGACCGCACCGAGACGCGCACCAACTACCCCAACATTTTCCGCATCTGCAACCTGGTGCTTTACATCCTGGTCATCATCCACTGGAACGCCTGCATCTACTACGCAATCTCCAAGTCGCTGGGCTTCGGCTCCGACACCTGGGTGTACCCCAACGTCTCGGACACCGAGAGTGACTCGTTGTCCCAGAGCTACGTGTACTGCCTGTACTGGtccaccctcaccctcaccacCATCGGGGAAATGCCGCCGCCCGCGCGGGATGAGGAGTACCTGTTCGTGGTGTTCGACTTCCTAGTCGGCGTGCTGATCTTTGCCACCATTGTGGGAAACGTGGGCTCCATGATCTCCAATATGAACGCCACGCGGGCCGAGTTCCAGGCCCGCATCGATGCCATCAAGCACTACATGCAGTTCCGCCACGTCAGCAAAGATCTGGAGGCGCGGGTCATCAAGTGGTTTGACTACCTGTGGACCAACAAGAAGGCCGTGGACGAGCAGGAGGTGCTGAAGAACCTGCCCGACAAGCTGAGGGCCGAAATCGCCATCAACGTGCACCTGGAGACGCTCAAGAAGGTGCGCATCTTCCAGGACTGCGAAGCCGGGCTGCTGGTGGAGTTGGTGCTGAAGCTACGGCCCCAGGTGTTCAGCCCTGGGGACTATATATGCCGCAAGGGCGACATCGGCAAGGAGATGTACATCATCAAGGAGGGCCGGTTGGCCGTGGTGGCGGACGATGGTGTGACGCAGTATGCCCTGCTGACCGCTGGCAGCTGCTTCGGTGAGATCAGCATCCTCAACATCAAGGGCAGCAAGATGGGCAACCGGCGCACGGCCAACATCCGCAGCATCGGCTACTCGGACCTGTTCTGCCTGTCCAAGGACGCGCTGATGGAGGCCGTGACGGAATACCCCGACGCCAAGAAGGTGCTGGAGGAGCGTGGGCGTGAGATCCTGCTGAAGGAGGGGCTGCTAGACGAGGACGCCGGGGCCGGGGGCGGGCTGGGTGGGGAGGAGGACATGGCAGAGAAGATGGAGCGGCTGGAGCAGGCGCTGGATGGGCTGCAGACACGGTTTGCGCGGCTGCTCAGTGAGTACAGCAGCGCGCAGCAGCAGCTCAAGCAGCGCCTCACCGTGCTGGAGCGCCGGCTGCGTCGCCCCGGCAGCCCCCCGGACAGAGTCCACATAGGCTATGGCAGCCTGAGGAGCCCACAGCCCTGGGGGCACAGAGAGGACGAGAGAGAGGCCACTGAGGGGCTGGGTAACTCCCTGTCTGGGCTGACAACACCAAACTGA

Function

GO: NA

KEGG:

id description
K04949 CNGA2; cyclic nucleotide gated channel alpha 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106936 lncRNA upstream 249764 16289749 ~ 16292193 (+) True G85674
TU106874 lncRNA upstream 372071 16140523 ~ 16169886 (+) True G85623
TU106784 lncRNA upstream 619236 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 786525 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 965439 15575549 ~ 15576518 (+) True G85497
TU107030 lncRNA downstream 2158 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 23948 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 26694 16572193 ~ 16572868 (+) True G85758
TU107044 lncRNA downstream 38818 16584317 ~ 16584765 (+) True G85760
TU107047 lncRNA downstream 40818 16586317 ~ 16589411 (+) True G85763
AMCG00021402 mRNA upstream 6141 16531948 ~ 16535816 (+) True AMCG00021402
AMCG00021398 mRNA upstream 14762 16526063 ~ 16527195 (+) True AMCG00021398
AMCG00021405 mRNA upstream 21594 16518570 ~ 16520363 (+) True AMCG00021405
AMCG00021397 mRNA upstream 42312 16474783 ~ 16499645 (+) True AMCG00021397
AMCG00021394 mRNA upstream 70101 16466707 ~ 16471856 (+) True AMCG00021394
AMCG00021399 mRNA downstream 4534 16550033 ~ 16555645 (+) True AMCG00021399
AMCG00021401 mRNA downstream 11099 16556598 ~ 16561776 (+) True AMCG00021401
AMCG00021403 mRNA downstream 28429 16573928 ~ 16579544 (+) True AMCG00021403
AMCG00021407 mRNA downstream 90856 16636355 ~ 16642487 (+) True AMCG00021407
AMCG00021408 mRNA downstream 107941 16653440 ~ 16655886 (+) True AMCG00021408
TU106850 other upstream 468339 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4441250 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5554783 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 7118538 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7908547 8631727 ~ 8633410 (+) True G84301
TU107049 other downstream 44682 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 111145 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 111145 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 452378 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1702991 18248490 ~ 18249686 (+) True G86121

Expression Profile