RNA id: AMCG00021401


Basic Information

Item Value
RNA id AMCG00021401
length 1734
RNA type mRNA
GC content 0.59
exon number 15
gene id AMCG00021401
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16556598 ~ 16561776 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCCCGCCCGCTCAGAAACTTATTAACCTGCAGCCACCAGGTTGCCATAGCAGTGCTGGCCAGGGGGAAAGTTCAGTCTCTGAAGTGAAAGAATCGGCTCCTTCGAGTGTGTTAGAACTTGGCGTCCAGGCCGCAGTGATGTCGGAAGCTGCGCTGGCTGTGTgggtgttgctgtgtgtgtccgTGACATCACAGGAGAGGTTGCAGGTTGTTTACAAACCCCCACAGATACCAGCAGAAGCCCACTTTGCAGAGTCATTTGACACAGGCTCACTAGAGAGGAGGTGGGTCCTGTCCCAGGCGGTGAagcagggagaaggagaggagaaaaCAATCAGATATGATGGGCAATGGTCAGTGGAGGAGCCTGCGGAGCAGCCTCTGCCCGGTAACAGAGGCATGGTACTGAAGTCTCCGGGCCGACACCACGCCATCGCAGCCCCCCTGCGCACAGCCTTTCACTTCCAGGACAAGCCACTTATCGTGCAGTATGAGGTGCAGTTTCAGCAGGGCATGGAGTGCGGAGGTGCCTACATCAAGTTGCTGTCTCACTCCGAGCAGCTCCACCTGCCGCAGTTCAGTGATGTCACCCCCTACTCCGTCATGTTTGGACCGGATTGCTGCGGCCAGAACCACACGCTGCACTTCATCATCCGACACTGGGACGCACGGACCGGCCAGTACCAGGAGAGACATGCCCGGCAGCCTGAGCTGGACCTGAGCGAGTACTTCACTGACCGTAGACCACACCTGTATACACTGAaTTTATACCCGGATAATCATTACGAAATACAGATCGACCAATCAGTGATCAGCAAGGGCAGCCTCCTGACGGACACCACCCTGCTTGGGGCCCCCCCAAGAGAGGTCGCTGACCCTTCGGACACCAAGCCCTCAGACTGGGATGACCGGCCACTCATCCCTGATCCCATGGTCACAAGACCGGTGGACTGGGACGAGGATGCGCCCCCGCAGATTCCTGACCCCTTAGCCCAGAGGCCCTCTGACTGGCTGGAGGAGGAGCCCCCTCTAGTGCCCGATCCCCATGCACTGCGTCCGCAGGACTGGGATGAGGAGATGGATGGAGAGTGGGAGGCACCTTGGATTCCGAACCCCGCCTGCAAGCATGTGATTGGCTGTGGCCCGTGGATCCCGCCCATGATCTCTAACCCTGCCTACAGGGGGAAGTGGAAGACCTCTATGATCACCAACCCAAACTATCAGggTCAGTGGCATCCCCGACTCATCCCAAACCCTGAATATGtagaagagggagagggggccCCTCCCGTGCGTCCGGCCCCTGTGGGGGCAGTGGGGCTGGAGCTGTGGGCGCTGACTGGTGGGGTGCTGTTTGACAATGTGCTGGTGTGTGGGGACAGGCGGCGGCCGTGGCTGTGGGGGGTGTACGTGTTCACCGTGGCGCTGCCCGTCGTCCTCTTCATCAGCTTCGTCTGGCCCGACAAGAGGTTCGGCCCACCTGACATGGATTATTACTACAAGAAGTCAGATGAGCCACAGCCGGACGACCCCGAGGAATCTGAGGAGCCAGAAGGACAGAGGAAAGCAGAAGCAAAGAGGTCATCAGCAAAAGCTGGCCTGGAAGTGAAACCTAAGCAGAAAATGACCGGGTCCTGGAGACTGCCCCACCACCACCGTCACCCCACTGAGAGCAAAAGTGGAGTCCTTCCTAGGGGCAGCAGACACACTATGAACTCCTTCCTGGAGTAG

Function

GO: NA

KEGG:

id description
K08054 CANX; calnexin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107030 lncRNA upstream 7253 16547657 ~ 16549345 (+) True G85746
TU106936 lncRNA upstream 264405 16289749 ~ 16292193 (+) True G85674
TU106874 lncRNA upstream 386712 16140523 ~ 16169886 (+) True G85623
TU106784 lncRNA upstream 633877 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 801166 15753082 ~ 15755432 (+) True G85507
TU107041 lncRNA downstream 7671 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 10417 16572193 ~ 16572868 (+) True G85758
TU107044 lncRNA downstream 22541 16584317 ~ 16584765 (+) True G85760
TU107047 lncRNA downstream 24541 16586317 ~ 16589411 (+) True G85763
TU107051 lncRNA downstream 34425 16596201 ~ 16596902 (+) True G85766
AMCG00021399 mRNA upstream 953 16550033 ~ 16555645 (+) True AMCG00021399
AMCG00021400 mRNA upstream 11099 16541957 ~ 16545499 (+) True AMCG00021400
AMCG00021402 mRNA upstream 20782 16531948 ~ 16535816 (+) True AMCG00021402
AMCG00021398 mRNA upstream 29403 16526063 ~ 16527195 (+) True AMCG00021398
AMCG00021405 mRNA upstream 36235 16518570 ~ 16520363 (+) True AMCG00021405
AMCG00021403 mRNA downstream 12152 16573928 ~ 16579544 (+) True AMCG00021403
AMCG00021407 mRNA downstream 74579 16636355 ~ 16642487 (+) True AMCG00021407
AMCG00021408 mRNA downstream 91664 16653440 ~ 16655886 (+) True AMCG00021408
AMCG00021415 mRNA downstream 193157 16754933 ~ 16756372 (+) True AMCG00021415
AMCG00021416 mRNA downstream 216806 16778582 ~ 16790852 (+) True AMCG00021416
TU106850 other upstream 482980 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4455891 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5569424 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 7133179 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7923188 8631727 ~ 8633410 (+) True G84301
TU107049 other downstream 28405 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 94868 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 94868 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 436101 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1686714 18248490 ~ 18249686 (+) True G86121

Expression Profile