RNA id: AMCG00021404


Basic Information

Item Value
RNA id AMCG00021404
length 1472
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00021404
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16545753 ~ 16550094 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTCATACGAAGAAAAAGAGTCACTCCAATATAACAGGCAATAGCTGTCTTGGCAGAAGCGGGGCCCGCCTCTCCCCAGTTCGCCGCGTTTTATTGGCTGTCGTCCTCGCTGCCTGGCTGTGATTGGTTAATCGTCACGTCAAGTCCGTTACCATAGCAGCGGGAGAAAGCTAGGAGAACATATGGGGTTGTTGACAGGCTTTTAAGGCCTCAATAAACACTGACTTTTTTGCTTTCATCGACGTAGGCTATTAAAACAAGACAAGAAAACAGGTCTGCACTCGAATACAGAATATAACCATTGCACTGTTGAAGTAGCTAACCGTAGCTGAGCCGGAGTTTGTCCCGGGGTGGTGTCTCCTGTCCCGGCCGATGGAGGGCCTGTCTTCCTTGGACACTCTGCAGGCGCTGTCCACACTCCTGTCCCCCTCGCCGGAGTCAGACGATGAAGACAGTTCGtCGGTTCAGTCTACTGCCAGGATGGGTCCAGTGCCCCCAGTGCCCCCAGTGCCCCCAAAGAACAGCAAGGAAATCTGGAGTGCAGAGGAGGTGGCGGAGGGCTCGCAGTTTGATGACATCATGGACCCCCGGCCACAGCCAGAgtatGAGGTGATGCTGCAGCAGAGTGTGGGCACAGAAGACGTGTTTCTGGGAATGAGCAGAAAGAACCCGTCTTCAGCCTGCTGTGAGCGCATTCTGGTGAGGATCAAACTGCCCGACACCAAGATGGCAGACGTGGTTCTGGACGTGAGGGAGACTTTCCTGGACCTGCGAGCGCCCAACTAtaaGTTGGGCCTGCACCTCCCCCACCCTGTGCACAGTGAGGAGGGGAGAGCGCGCTTCGTGTCTGAGAGGGGCGAGCTGGAGGTCTCTCTGCCCACCAAGCGCCCGCTGGACTGCATCAACctggcctgagagagagagagagagagagagagagagagagcaggcaaaagaagggaggagagagacctAGTCTGGCCCTGTCACAGAGACAGTACAGGGGCAGAGCACTAGGGGACAGGAGAACCAAGCCTGAGAATCATGTATGGACTGAACTGGCACACTAAACTGGATTGATTATTTGCTAACACACTTTCCAAGTCTTTGCTCATTGACCCCTcccccaaataaatatattaatccTATACAATCGTagcaaaaaaatgtttatttcttgattttgtttgtttccaaacattaaaaaaattcaaataaaacaagtgttCACATTAACAGTACACACATCGTACATTGTTTGGGtgtaattctgtaaaaaaatattgtaagaatattttttttctccctcctttACACTACAGAAATGTTTAAGGCATTCATATTATCGTGATCGTTATTATCATCATGCATTTATAATTCAGTACAACCCAGCTGCACAGGATAGCGATTGCAGAACGTCCTCAGACAGGGTGACCCAAACACAGCTTCTACCCTGAGATGAAATAAACG

Function

GO: NA

KEGG:

id description
K24253 DNAAF6, PIH1D3; dynein assembly factor 6, axonemal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106982 lncRNA downstream 73994 16471552 ~ 16471759 (-) True G85716
TU106916 lncRNA downstream 278955 16179162 ~ 16266798 (-) True G85658
TU106917 lncRNA downstream 278955 16266009 ~ 16266798 (-) False G85658
TU106817 lncRNA downstream 525011 16015533 ~ 16020742 (-) True G85580
TU106831 lncRNA downstream 534051 16011231 ~ 16011702 (-) True G85592
TU107056 lncRNA upstream 15623 16565717 ~ 16566021 (-) True G85771
TU107100 lncRNA upstream 141473 16691567 ~ 16757611 (-) True G85802
TU107125 lncRNA upstream 257712 16807806 ~ 16809320 (-) True G85824
TU107139 lncRNA upstream 272722 16822816 ~ 16823079 (-) True G85837
TU107200 lncRNA upstream 519750 17069844 ~ 17071130 (-) True G85889
AMCG00021406 mRNA downstream 41374 16503741 ~ 16504379 (-) True AMCG00021406
AMCG00021396 mRNA downstream 93109 16439436 ~ 16452644 (-) True AMCG00021396
AMCG00021393 mRNA downstream 186746 16357265 ~ 16359007 (-) True AMCG00021393
AMCG00021387 mRNA downstream 303330 16234317 ~ 16242423 (-) True AMCG00021387
AMCG00021392 mRNA downstream 328298 16216436 ~ 16217455 (-) True AMCG00021392
AMCG00021411 mRNA upstream 17045 16567139 ~ 16572494 (-) True AMCG00021411
AMCG00021410 mRNA upstream 31468 16581562 ~ 16590609 (-) True AMCG00021410
AMCG00021412 mRNA upstream 97622 16647716 ~ 16649940 (-) False AMCG00021412
AMCG00021409 mRNA upstream 106550 16656644 ~ 16674176 (-) True AMCG00021409
AMCG00021413 mRNA upstream 158300 16708394 ~ 16709440 (-) True AMCG00021413
TU106928 other downstream 303098 16241004 ~ 16242655 (-) False AMCG00021387
TU106219 other downstream 2493856 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2627885 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 2918006 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 3744167 12719864 ~ 12801586 (-) True AMCG00021259
TU107075 other upstream 97045 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 97045 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 748786 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 869510 17419604 ~ 17423418 (-) True G85953
TU107350 other upstream 997068 17547162 ~ 17552766 (-) True G86010

Expression Profile