RNA id: AMCG00021407


Basic Information

Item Value
RNA id AMCG00021407
length 2827
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00021407
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16636355 ~ 16642487 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acagaaactcccttctacaacctgtttactttcaccaactcagcagctgaactgaattgacttcaatttaggcaaacacAAGTGCACACCAGTGTTCGGCAGCATCTGCAAAAAGGAACTCCCATCTTCAGACACTACaccatttttaattatcttaTCCAAAGTACATCTATGCAGTAGATTTAAGTTTCTGAGTTGGAAAAGATCTTTGTCAGGCATTTTGTGTCCAAAATAAGGGAAACTGCTTGGTGAGTATTATATATAGAATTATATGCATATGTTCTCAATCCACTTTTCTAAAGCAATGCAGAACCAGTGCGGCTTATGTCACAGAAAGGTTATATACTGTAATTATGATCAATCATGTGCAGCGCAAGAACTGGCATCTATACTGTGGTAAAcggtgtgtggtgggggggatgcCAGgttaaaactatgaaaataattatgaaatgttaaaatgaagaTTGCTGAGGATAATTAGACTTTAGAAACTTTTGGATTTTGTTGTATGGGAATagctttaaaatgttctgttgcAAATTAACATTCTGCAAGGTCTTTCATAGACCCAGCTCTAATCATGGACTACCCAATGTAATTTTGGGTAGagtagtgctaatcaaggtctgtgaaatcaGCCTTGACAGAATTGTTTCAGTTAAGCCTCGGTTATATTGATGCAAGCACACTTGCTGCCTGATTACAGTGGTCACTAACCCTGATGGCATGTGACCACCGTGCAGGTCCGTCCCCCCTCCTGCCGGCAGCCAGCTATGCCTGCACAGTTGACCTCGTGATACACAACACGATCCAATCAGATATTGGAAAAAAGCATGAGGGGGACTTCGTTTTCACCAGGCCTCTCCAACGTCCACAGCTGTATGTACCCTAGCGCTCCCAGTGCCATCCGCATATCCGTACTCAAGTAGAATTAGTCCCCACAAATCCTTTACGGCTCGCCCTACATCACCGTACCCAGCACTGCACCTCTCTACCCACGCACATGCCCCAATATTCTCCTGGACTTCAAgcatcttatatatatatttttttttaacacccaTGTGGTGTTATGATTCATACTGCGATGATTTGATTGCTAAGGCTATAGAGGGGTCCATGGGCTGTCCTGTGTGTACCCATGTGTTAGCCATTTGCAAATGGTGTTTCTCATTAAACTTAAGCTCCCAGGGGTATGTAAGTGCAGGTGGGTCTCGCCATGCAAAAGATCAAAGGGACTTTAAAAGGTCTGTGAGCTTTTGAGTAATTAAAACCCTGGTCActtagtttttcttctttctttccttccttgcAGTTGATGTGGAGCACTCTCATGTCCGATTCCTTGGCAACCTTGTCTTGAACCTTTGGGACTGTGGAGGTCAGGACACGTTTATGGAGAACTACTTCACCAGCCAGAGGGACAACATCTTCCGAAATGTGGAGGTGCTGATCTACGTGTTTGATGTGGAGAGCCGGGAGCTGGAGAAGGACATGCACTACTACCAGTCCTGCCTGGAGGCCATCTTGCAGAACTCCCCCGATGCCAAGATCTTCTGCCTGGTGCACAAGATGGATCTGGTGCAGGAGGACCAGCGTGACCTGATATTTAAGGAGCGTGAGGAGGACCTGAGGAGGCTGTCACGACCCCTGGAGTGTACGTGTTTCAGGACATCCATCTGGGATGAAACGCTGTATAAGGCCTGGTCCAGCATAGTCTACCAGCTGATCCCCAACGTGCAGCAACTGGAGACCAACCTGCGCAACTTTGCCCAGATCATAGAGGCCGATGAAGTGCTGCTGTTCGAGAGAGCCACCTTCCTGGTCATCTCTCACTATCAGTGCAAGGAGCAGCGAGACGCCCACCGGTTTGAGAAGATCAGCAACATCATTAAACAGTTTAAGCTGAGCTGTAGTAAGCTGGCTGCCTCCTTCCAGAGCATGGAGGTCCGGAACTCCAATTTTGCCGCTTTCATCGACGTCTTCACCTCAAACACTTACGTCATGGTGATCATGTCAGACCCATCCATACcctCGGCAGCCACACTGATCAACATCCGGAACGCCCGGAAGCACTTTGAGAAGCTGGAGCGCGTGGACGGGCCCAAGCACAGCCTGCACATGCGTATGCGCTAGGCAGCCATCCTCTCTGGCAACCCACGTTGGCCAGTAAGGCAAGGTGTGTGTTCCCAGAGGCACCCAACCAATCAGTAGAGAGCCCTGAGCtatggaggggaggggggagtggAAGTGGGAGGGGCTGACTCTGAAATTTCTCAGGCAAAAATAAACCGCCCGAGATGTGAACCATCCACGTATTACTGTCCCACTCAATCATACCTTTTCATACCGTAATACTAAAAATCTGTTATCCTATTCTTGTTGGGACAAgagactttttttctcttcagtgtttttctgttaccattttggaaatgtatcgaggcttgtgttttcatgcggatatttatataaaaaaaaaaacacattttcaaggaGAGTTAATGATTTAGTGCGTTCTGTGCGTGTCTGTACGAAGTGCATTACTTTGTTTGCCATTTAAACTTTAAGGATTATGGGGTTGAAAtaatgggtgggggggtgccCTTGGTTTTGTACCTGTGTGAAGGGGAGCAGTGTTGGTTGAGGAATCAATATGCCGCTTTTAAGAATGGTCTTGGTCCCATCAGACCGAGAATGTCTTTTGCGGCCACAGTTTCTGACCttgtgcaatttttttttttttttggactgccaaatatgcaaatgcagagagaaataaagGGCAGGCCACCTGGAGTGTGGCCTGCAGTGTTGGACTCTT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16185 RRAGA_B; Ras-related GTP-binding protein A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107051 lncRNA upstream 39453 16596201 ~ 16596902 (+) True G85766
TU107047 lncRNA upstream 46944 16586317 ~ 16589411 (+) True G85763
TU107044 lncRNA upstream 51590 16584317 ~ 16584765 (+) True G85760
TU107042 lncRNA upstream 63487 16572193 ~ 16572868 (+) True G85758
TU107041 lncRNA upstream 66705 16569447 ~ 16569650 (+) True G85757
TU107071 lncRNA downstream 4652 16647139 ~ 16649848 (+) True G85784
TU107124 lncRNA downstream 165319 16807806 ~ 16809314 (+) True G85823
TU107184 lncRNA downstream 394085 17036572 ~ 17042575 (+) True G85876
TU107214 lncRNA downstream 444265 17086752 ~ 17087794 (+) True G85903
TU107274 lncRNA downstream 655672 17298159 ~ 17298813 (+) True G85941
AMCG00021403 mRNA upstream 56811 16573928 ~ 16579544 (+) True AMCG00021403
AMCG00021401 mRNA upstream 74579 16556598 ~ 16561776 (+) True AMCG00021401
AMCG00021399 mRNA upstream 80710 16550033 ~ 16555645 (+) True AMCG00021399
AMCG00021400 mRNA upstream 90856 16541957 ~ 16545499 (+) True AMCG00021400
AMCG00021402 mRNA upstream 100539 16531948 ~ 16535816 (+) True AMCG00021402
AMCG00021408 mRNA downstream 10953 16653440 ~ 16655886 (+) True AMCG00021408
AMCG00021415 mRNA downstream 112446 16754933 ~ 16756372 (+) True AMCG00021415
AMCG00021416 mRNA downstream 136095 16778582 ~ 16790852 (+) True AMCG00021416
AMCG00021417 mRNA downstream 155171 16797658 ~ 16806805 (+) True AMCG00021417
AMCG00021419 mRNA downstream 189795 16832282 ~ 16833265 (+) True AMCG00021419
TU107049 other upstream 43382 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 562737 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4535648 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5649181 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 7212936 9416267 ~ 9423419 (+) True G84425
TU107079 other downstream 14157 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 14157 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 355390 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1606003 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 2637278 19279765 ~ 19282915 (+) False AMCG00021485

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000032_03046961_03053202.mRNA True 1645 mRNA 0.42 8 CI01000032 3046961 ~ 3053926 (+)