RNA id: TU107075


Basic Information

Item Value
RNA id TU107075
length 520
RNA type TUCP
GC content 0.54
exon number 4
gene id AMCG00021412
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16647139 ~ 16649940 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCACGGCAGATTCCTGGTTCGGGCCTGACGCAGCGGAGGACAGTCGGGAGACGAGACATGGGACCGACGGAGACATAAGCAAAAGAGtttttgtttgtttcatgtctGAGAGACCAAGCCGGCAGAAAATCGTGCACAGAGAAACGGGGTGCagtgagagagaaggggggacaGAGACTCAGCAGGTTCAGGAGCAGTCCGTCCAAGAGGGGGCGATGTCGAGCACAGCCATGAagaaaaagGTGCTGCTTATGGGGAAGAGTGGGTCTGGGAAGACCAGCATGCGGTCGATCATCTTTGCCAATTACATCGCTAGGGACACCAGGAGGCTGGGGGCCACAActtctaccacatcgctggagagtttgttccagattgtgacgcctctctgtgtgaagaagtgtctcctgttttccgttttgaatgccttgaagcccaacttccatttgtgtccccgggtgcatgtgtccccgctgaactggaaaagctcctctggtttgatgtggtcgatgcctttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107056 lncRNA downstream 81118 16565717 ~ 16566021 (-) True G85771
TU106982 lncRNA downstream 175380 16471552 ~ 16471759 (-) True G85716
TU106916 lncRNA downstream 380341 16179162 ~ 16266798 (-) True G85658
TU106917 lncRNA downstream 380341 16266009 ~ 16266798 (-) False G85658
TU106818 lncRNA downstream 626397 15976565 ~ 16020742 (-) False G85580
TU107100 lncRNA upstream 41742 16691567 ~ 16757611 (-) True G85802
TU107125 lncRNA upstream 157981 16807806 ~ 16809320 (-) True G85824
TU107139 lncRNA upstream 172991 16822816 ~ 16823079 (-) True G85837
TU107200 lncRNA upstream 420019 17069844 ~ 17071130 (-) True G85889
TU107215 lncRNA upstream 436897 17086722 ~ 17087718 (-) True G85904
AMCG00021410 mRNA downstream 56530 16581562 ~ 16590609 (-) True AMCG00021410
AMCG00021411 mRNA downstream 74645 16567139 ~ 16572494 (-) True AMCG00021411
AMCG00021404 mRNA downstream 97045 16545753 ~ 16550094 (-) True AMCG00021404
AMCG00021406 mRNA downstream 142760 16503741 ~ 16504379 (-) True AMCG00021406
AMCG00021396 mRNA downstream 194495 16439436 ~ 16452644 (-) True AMCG00021396
AMCG00021409 mRNA upstream 6819 16656644 ~ 16674176 (-) True AMCG00021409
AMCG00021413 mRNA upstream 58569 16708394 ~ 16709440 (-) True AMCG00021413
AMCG00021414 mRNA upstream 70964 16720789 ~ 16732937 (-) True AMCG00021414
AMCG00021420 mRNA upstream 192938 16842763 ~ 16850257 (-) True AMCG00021420
AMCG00021422 mRNA upstream 249551 16899376 ~ 16908983 (-) True AMCG00021422
TU106928 other downstream 404484 16241004 ~ 16242655 (-) False AMCG00021387
TU106219 other downstream 2595242 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 2729271 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 3019392 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 3845553 12719864 ~ 12801586 (-) True AMCG00021259
TU107277 other upstream 649055 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 769779 17419604 ~ 17423418 (-) True G85953
TU107350 other upstream 897337 17547162 ~ 17552766 (-) True G86010
TU107351 other upstream 897337 17547162 ~ 17552264 (-) False G86010
TU107397 other upstream 1276274 17926099 ~ 17926708 (-) True G86049

Expression Profile