RNA id: AMCG00021416


Basic Information

Item Value
RNA id AMCG00021416
length 4260
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00021416
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16778582 ~ 16790852 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAcaaccccctctccctctggCTAACCAATGACAGGCATATCCTACACCGacgaccccccacccccagccccgGCGCTGGACGCGTTATTGTCCCGTTTCCTGGGGCAGACAGGAATCACAGACGCACTCGCCCTCACGCCAGCAGGAGCCCACAGTGTCCCGCTTTGCAAAGTCGCAGCTCGGCTCCGTGGTGCACAGACTGGCACCTTGACCGGCTGGCGAGCCGGGGTGGACACCACGCGTGTTTCCTTGCTCGGGGCTCGGGCGGGTCGTGTCTGTGTCGGTTCTCCCGGTGCCGTGCAGCCCGCAGCTTGCTGCTGTGAAGTGGGTGGTCAAATTGACGGCTTTCACTGTCTCACGGCACCGTCCCTGACAGCTACCGGCCCCGGGAGACACAGGTCGGCAGTTAAACGGGAAGGTCCGGTCCGGTGCAGCGGCGAGgACACAGACGTCAGGCAGGCTTTACAGGACAGCCCAGGATACAGCGGCTGAGGAGAGGTGTGGCCTTGCATGGTTTCCAGGCCAGGGAAGAGACTgacagagaccgagagagacGGGGGTGGTGGTGGTTAAGGTCTTTTTTGGCTGTGTGCAGATGATGGGCAGGCAGTGGCAGCTTTGGCTGCTCCATTGCTGACTGCAGGGCCATCCTGTAAGGGCCCTCCTTCGCAGCAGCTAAGATGTCGAGCCTCGGCCTCAACGAGAGCACTGAGGACTGCGCCATAGACGACTCCTTCAAGTACAACCTATACGGGGCGGTGTACAGCGTGGTTTTCGTGCTGGGCCTCATCACCAACTGTGCCTCGCTCTTTGTCTTCTGCTTCCGCATGAAGCTGCGCAATGAGACCACGCTGTTCATGACCAACCTGGCTGTGTCGGACCTGCTGTTCGTCTTCACGCTGCCCTTCAAGATCTTCTACAACCTGAACCGGGACTGGCCCTTTGGCGACGGACTGTGCAAGGTGTCGGGCACGGCCTTCCTCACCAACATCTATGGCAGCATGCTGTTCCTCACCTGCATCAGTGTGGACCGCTTTCTGGCCATCGTGTACCCCTTCCGCTCACGCTCAGTGCGGACCAGGCGCAATGCTGCTGTGGTGTGCGCCGGGGTGTGGCTCCTGGTGCTGGGTGGGGGGATCTCCGTCTCTTTCTTCTCCACCACCAACGTGTCCAACTCCAGCACGACCTGCTTCGAGGGCTTCTCCAAGAAGACCTGGAGGACCTACTTGTCCAAGATCACCATCTTCATCGAGCTGGTCGGCTTCCTCATCCCACTGCTGCTCAACCTAGCCTGCTCCTCCATGGTGCTGCGGACGCTGCGCAAGCCGGCCACGCTATGCCAGATTGGCACCAACAAGGAACGGGTGCTGCGCATGATCGTGGTTCACGTGGCCATCTTCGTGGTGTGTTTCGTGCCCTACAACTCCATCCTCTTCCTCTACGCCATGGTGCGCTCCCAGGCATTGGCCAGTTGCTGGCTGGAGCGCTTCGCCCGCACCATGTACCCCATCACCCTCTGCATTGCCACACTCAATTGCTGCTTCGACCCCTTCGTCTACTACTTCACCTCCGAGTCCTTCCAGAAGTCCCTGGGCACGGGGAAAGGCCAGACCAAGAATGACAACACGTTCAAGAGCGACGTACCCCTCTCCAGCAAAGACAGCCCGCCCACCCTATCCgagcgggggcgggggggtgctCACAGGACAGACAGCAATGGCAGGGAGCTCTTGTCTGAGTCTCAGTTCTGATCCCCCCCTCCCTTTATACAAGGATTTTCTGTTCTTCGCCTTCTGTTGGGTTTTCATAAGAGCAGCATTTGACagacaaaatggaaatgtgtcTTATTGCTGCCGATTGGAAGGTTTGAAAAGCTCTGTTGCATAAGCTGAGAGTTGGATGATGTCAGCAGGCACTGGCTTTCTATTGTGTCACTGAAGGGGCTCAGTGGGAACCTGAGGGGGTGTTTGGCCCTGTCTGAAGATTTTGCACCAGAATAATTATGCATCTTGTTGttggaaataaaatcaatcacaaTCTCATTATTCATAAGCTGGGATAACTCAAAAAGATATCAAGAGTCAAGTCAAAATTACTTTGGGATCTTTCGGAATCTCTCAGGCTTTGCAAATTATGTAATTCCCAAGGAGTGGAGTATGCTCAAGAAGGATGGTGTCCAATCAAACAAGTGGAAACCCCTTAAGATCCTGTGAGACCAAACATTCAGGACAATTGTTTTGACTGAATCAGTGAAGCCCCAAGATCTTCCTGAAGTCTCATTGACACTTGGCAGTCCTTTCCTACTAGATGAATGCATTAGTTTTAGACACTGGAAGAGTTGGTGTGAAAGGGAGGAGGATTGTGACCTTGTGTAGCTGTTTAtggttgttgtgtgtgtaatatactCTGTATCTGCTGTAGCACAGTGCTTCAAATGCTTAACCGTGCACTGCTCACACTGCATAACCAGTAGCCTAGGgacaacacaaatacagacacagCTACCTCATAGTGTCCTTAGTATGGCACTGTGTGGGCCCAGTCTTAGCCTTAGTGTCTTCTTTCCTCCCTCTGGGAGGTAACCGGAACTAGTCCTgtccctgttttgttttgttttctagtgCAGTGACAGAAGCTGGTCTCTGCGATGAGcctgtctgtttctgtgggaACGACAGCAGGACTGAGCAGCGCTGTGGAATGTTCTCTGGAGCTCTTCTCCTCAAAAGCACTGTCTGCTACCCTCCCAGCACTGTGAGACAGCATTACCTGTTTTGGTAGAATTAGTGGTGCCCCCCACTATAAAATTCCATTGATTCTGGCCAAGTACTGGTGTGCAAAATATCCCAATGCTATCCTGCCAGTTGTGCTGCCATTGAGAATAATAACATAATAGCAGCCTGTACACATCACATTACCTCTGATACAAGCTGTCAGGCTTGGCTTGCCACTTACTTCTAATAGCCTGGTGTATGTGCTGTGTAGTTATAGGCCCAAGCATTAGTTAAAATTACATCCAGTACTCCCGACGGCACCCCTCCCTGGAGTCTGTCAGTTCCCTATGCGCCGCCCTGCCTGAGACTCTCACTGGCTGTGGTCAGAAACACAGGATGTTTAAAGTTGCCCCAGGGGCAGGATTGTTCTGGGTGCTGCAGTTTTCCTGCTGCTTAAAAAAAGGGGTTTCCACACTTTGTTTGCGACAGACAATGCATGTATGAGGTTTATGGTGATTATGAAGGAAAACacagaggggggtggggggagcggTGGAGTGAGAGTACTGAGCTCTAACATATTGTGAAAACTGGCCGTGCAGCAGAACAAGAAAGCATACAGTACAGTTTAAGTACAAAAGTGTTTATTATTCATCCACATTCATAAACTGTAGTGAAAAGATCAATGtagatttattaaaaataaataatttatttatattttattttttaatttaatatatagatGTGGTTGTGTAGCTTCACAACACAGCACTGGAGAGGGCAGGACACTGGTCTGTAGAGCCTGCTGCAGGCTGACCTCACATTCCAAGCCGTCATTACAGATCATTCACAATCGGTGTGTCGAAGATTAAGTTGCAGGGCTTTCTGAAGTGGTCTGGACTCTGCACGCACTGGGggaggaaataataataataaggcggaaaataaacataacaacaGTATAAAACATGCtctttacagaaaataaaagcacaagaACACTTTACTTATTGCTTACTCTAACAGAAGTGAGGTTATTGTAAGGGCCAGTGAGGACCTGAAGCAGCAGCTAGGAACACCGATTGTGTGAATTAGAACCAGGAAGTGCCTGGACTCCACACATGAACACGCAGCACCCCAGCACATGGTTGGGCACTACTATTTGCTTCCTCTTTGTTAGAACTTATGCTGTATTGCTGTTCACTGATTTCAAAGCCCTGCCTATCGCTGTTGGAGAGGTTTGAGATGTGCCGATAAAAGCCCACTGGATAATAGATGGATCCCTGTACCTCCCTAGGACATAGCCTGCACTTGTACAAAAGCTTGACTGTACTGGGGCCGTCATGCTGACATGCAGGAAAGAACGAAATGTCTGTATTTGAAAGTGTTAAAGTTTACTCTGAGAATTGACAACACTGTGAACAGGAACAGAAGAGCACTTTTGTAGAATTCACTGTTGGAGTTGTTACAGATTAACGAgcaattaaaaggaaatgtgcCCTGTAAATAAAACGTGTTTTCATTCTGGCacattgaccaatt

Function

GO: NA

KEGG:

id description
K04275 LPAR4, GPR23; lysophosphatidic acid receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107071 lncRNA upstream 128734 16647139 ~ 16649848 (+) True G85784
TU107051 lncRNA upstream 181680 16596201 ~ 16596902 (+) True G85766
TU107047 lncRNA upstream 189171 16586317 ~ 16589411 (+) True G85763
TU107044 lncRNA upstream 193817 16584317 ~ 16584765 (+) True G85760
TU107042 lncRNA upstream 205714 16572193 ~ 16572868 (+) True G85758
TU107124 lncRNA downstream 16954 16807806 ~ 16809314 (+) True G85823
TU107184 lncRNA downstream 245720 17036572 ~ 17042575 (+) True G85876
TU107214 lncRNA downstream 295900 17086752 ~ 17087794 (+) True G85903
TU107274 lncRNA downstream 507307 17298159 ~ 17298813 (+) True G85941
TU107314 lncRNA downstream 668641 17459493 ~ 17459941 (+) True G85976
AMCG00021415 mRNA upstream 22210 16754933 ~ 16756372 (+) True AMCG00021415
AMCG00021408 mRNA upstream 122696 16653440 ~ 16655886 (+) True AMCG00021408
AMCG00021407 mRNA upstream 136095 16636355 ~ 16642487 (+) True AMCG00021407
AMCG00021403 mRNA upstream 199038 16573928 ~ 16579544 (+) True AMCG00021403
AMCG00021401 mRNA upstream 216806 16556598 ~ 16561776 (+) True AMCG00021401
AMCG00021417 mRNA downstream 6806 16797658 ~ 16806805 (+) True AMCG00021417
AMCG00021419 mRNA downstream 41430 16832282 ~ 16833265 (+) True AMCG00021419
AMCG00021418 mRNA downstream 85146 16875998 ~ 16884879 (+) True AMCG00021418
AMCG00021421 mRNA downstream 131719 16922571 ~ 16929677 (+) True AMCG00021421
AMCG00021424 mRNA downstream 256761 17047613 ~ 17063209 (+) True AMCG00021424
TU107080 other upstream 64544 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 116700 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 185609 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 704964 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4677875 12075345 ~ 12100707 (+) True G84749
TU107177 other downstream 207025 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1457638 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 2488913 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 2708948 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 3551758 20342610 ~ 20401249 (+) False G86601

Expression Profile