RNA id: AMCG00021423


Basic Information

Item Value
RNA id AMCG00021423
length 3048
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00021423
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17066613 ~ 17071130 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttttttagaatcgGTTATTTCCTGCTGCAGTGTATTAAAACACACTTCCCTACCCACAGAGCTGCTTTACGCAGAACCGCGTAAAGTTGTCCTGAGCACTCTTGTGAGCAGGAGTTCCTGTTTCCATGGTGTAAGAGTAGGCCGTCTTTTCTTTTTGCGGAAGTCAGAGGCCGTTGCTGTTACTCATCATCTTCTGTACCAGAGCGCACTTGGCTGGGGCTGCATCAGAGCAGCACAGTGCGCCCTCACTCACAGGCCCCAGGCTCCCACCGGTGGCGCACATACACCCATACAGACAGaccagacactgactgacaggtACAGCTCAGCAAGCGGGAAGACTGGGTGACCACACAGCAGAGCTTCGCCACACCCCTGTCCTCTTGGAAAGAGACATAATTCGCTCCACGGGTCTTTGCAAACACTTGCTGGGACAGGGGAACCACTTCTACTATCATCCTACAGCAGcaTCGTTGTCGTACCACTGGAAACGCCATGCTGGCAGAGGCCTTCATCAGGGTCAAAGCTTATCAGGAGGGCTGCTATGGCACTGCCACCGTGACTGTCCACCCCCATGCCCACTCCCACCACCGGCAGAGCAGCAGGAGGGAGCTCTGGAAAGAGGACTCCACATTCATCGAGCTCGGCGAGGAGATGCAGGAGGAGACCAAGCCGGCACGGGGGTCAcggcagccagctctgccacAGAGCAGTGAGGCTCGGCCCATCCAGGGCAGAGAGCCACAGGAGCACATGGGGCTGGAGCTGTATCGCTCCTGGGGCTGCACCAGCATCTGCAAAGACTACCCTGACCTGCAAATCGGGGGTGACCACATCGGGGACAGGAGCTCTGCACACTCGGGACTGTACGTTGCGCAGATGGACAGCAAGACCCACCTGGGGCCTGTGCTGCAATCCGGAGACCTGGATCTGGGGCTGGAGGCACTGCAGCCTGGGCCTCAGCTCCAGGGTTGGGGGGAACAGGGCAAGGCCGGGAGGCTGTGTGaggctggggggctgggggagtCAGGGTCTGATGATGGCTACCTGGTGATGGACAGCAGCATCAGCCTGCACAGGGAGCCACTCTCCAACTCCATGCTCAACAGCTACCTGGAGAACAAGCTTCTGGAGGTATACAAGCAGTACCTGCAAGACAGCCTGGTCAAGTGCGGCTCTCCGAGTCGTGCACTGCCCACCTCCTTCATCCAGGACAATGTCCAGCAGCTCAGCCAGCAGCTGTCCCAGGAGCAGGGCCTTGATGTGCCCCGGGCACGCAGCATCGTCATCAACTATCTGAGTGGGCTCCACGGCAGCTGTGGCTCCCACTTCAGCTCCCCCGTGCTGCGCATCTCCAATGCCGAGCAGAGGAAGTTCCTGGAGCCCCCCAAGAGGAAGgcctcccccaccaccaccactgctGCCACACCTGCTGTTGCCCCTGCTCTGTAGGGCTGGCAGGGAGTGAAGTGTGCTTCTGCTGCATCCTGTTTGCACTTCAGTTGTTAAAACTTGATTAATGTAATGCTTTCCCTTTTTAAGttttaacaatataaattattatatttttgagaCCATTAAAAAAGGGTCCCTTAAGTTCTTCATTTGTGCCTGCGCTtgtatgtgttttcttttagagAAGAATATTAGCAGTGTTCTTAGACGGGCAACCAGTGCGGTTCTTCCAGTGCGCTCTGGTCGTCTCACGGAAGCTTTCTGGTGGCCTCCTTATTAAAACAGTACACTgtgtactgtacactgtatgTCTCCAAGGACAGTTTAAACAGAACCAGCAGCCAGATTGTAAGCCTCAGGTCTGTATCTGTTCCGTTTTTCTCGACaaacaggttttaaaaataaacctgtgaGCACAGTGGTGTGACTGTATCTGAGACacattctgtgtgtttttaaagatcgGCGCTGCACCCGCCGCACTTCATCTGCAGTGACCTGGTCACTGCGCTGGGACCACTGGGCTGCAGGTGCCAGGCATGGAACCTGTACATCGATGCAATTCCGTTGTTCATCTGACAATAAGatcaatgaaacacacacaaccaacTTACTAATCAATTcaccaattattttattcaattaaaattaattactcCACATAACATACTAGaatgtcatattttaaagttttccaAGTCAGGTAAAACCATCTTTCATCCTGTGACTGATATGTAAATacgtgtttttctttttgtgttctAAACCTACATTGTATTTCTAATTATTGTAAGTAAGTATATTAGTAGTTGGTGAAGTCCTTCTGTGTGCTACAGGATCAGGCTGGCATTGTAGCAGGCAGATCCTGGGGTTCTGAGGGAATCATGGGTTTCCTCAGCAGGTCAGGTCCTGCTTTTTTGCAGTTATTAATAATTTCGCTCATCACCATGAATGCTCAGCACAATATCCATTCTCGTCTGCTACAGAGGTGCAGGTGTGCAGCTTTGGCCTGAACCAAAGGCCAAAAAAGATCGAAACtatgatgtgttttgtttatttacccTCTGCTACAAATGCTGTCAAATCCATGTACTGCAAGCACACAGCTAAACCGGAatcaacccccccacacacagagaaagaggaaCTGCCACTTTTAAAAGTGCTACttctatttaaaaactatttcccCTCCTTCATGACATGAATTGACAGcagtcttgttttttaatataacagtaGCAGCCACTTCAGCACTGGGCCTGCAGCTCTGCCTCACATGAAGACTGGATAAAAACAGAGCAAAACTCCACTGACCTGGCTTGTACAGGTTTCAGTCACAATGTCAACTCTGAGCTCCAGAACTCAGAAACTTCAGATGCATCCTGGCCCACACACAGCTGGCAGAGGAAGATGCAGTTGAAGGTCGCCACCTGCTGTGGTGCCTTGGTATTGCTTGTGGAAATGCTTGTGCATGTAACACAGGAGTGTCCTGGAAGGTTAAACAGTTCACAATACTGTAGATGTATTCAGTGTTCAAAACAGTCATGATCCTAAAATAAAACTTCTCCTTTTAAAAGTTTA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107184 lncRNA upstream 24038 17036572 ~ 17042575 (+) True G85876
TU107124 lncRNA upstream 257299 16807806 ~ 16809314 (+) True G85823
TU107071 lncRNA upstream 416765 16647139 ~ 16649848 (+) True G85784
TU107051 lncRNA upstream 469711 16596201 ~ 16596902 (+) True G85766
TU107047 lncRNA upstream 477202 16586317 ~ 16589411 (+) True G85763
TU107214 lncRNA downstream 15622 17086752 ~ 17087794 (+) True G85903
TU107274 lncRNA downstream 227029 17298159 ~ 17298813 (+) True G85941
TU107314 lncRNA downstream 388363 17459493 ~ 17459941 (+) True G85976
TU107316 lncRNA downstream 399195 17470325 ~ 17473396 (+) True AMCG00021441
TU107331 lncRNA downstream 436396 17507526 ~ 17509083 (+) True G85992
AMCG00021424 mRNA upstream 3404 17047613 ~ 17063209 (+) True AMCG00021424
AMCG00021421 mRNA upstream 136936 16922571 ~ 16929677 (+) True AMCG00021421
AMCG00021418 mRNA upstream 181734 16875998 ~ 16884879 (+) True AMCG00021418
AMCG00021419 mRNA upstream 233348 16832282 ~ 16833265 (+) True AMCG00021419
AMCG00021417 mRNA upstream 259808 16797658 ~ 16806805 (+) True AMCG00021417
AMCG00021429 mRNA downstream 1221 17072351 ~ 17080517 (+) True AMCG00021429
AMCG00021430 mRNA downstream 11609 17082739 ~ 17097379 (+) True AMCG00021430
AMCG00021433 mRNA downstream 154710 17225840 ~ 17226928 (+) True AMCG00021433
AMCG00021431 mRNA downstream 170552 17241682 ~ 17250316 (+) True AMCG00021431
AMCG00021434 mRNA downstream 268286 17339416 ~ 17364818 (+) True AMCG00021434
TU107177 other upstream 62482 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 352575 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 404731 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 473640 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 992995 16063600 ~ 16073618 (+) False AMCG00021373
TU107506 other downstream 1177360 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 2208635 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 2428670 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 3271480 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 3307293 20378423 ~ 20380424 (+) True G86616

Expression Profile