RNA id: TCONS_00009424


Basic Information

Item Value
RNA id TCONS_00009424
length 4136
RNA type mRNA
GC content 0.48
exon number 21
gene id XLOC_004765
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27213733 ~ 27229858 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAATCTAGCGATGTAAACAAGAACGCAAAAGACAAGTCTCACAGTGTTGACAGCACCACGGGCATTTAGAGCGTCGTATCCCCTCATCAAACGCTTCCGTTGACTCTGGCTCACAGACATGAACCTCCCCGTCACTGTCAAAGTGAACTTTAGGGGCAACGTGAAGAAATTTCCAGTCTTGGACACGAACAAAGCACAGTGGGAGACTGTGGAGGCCTGGATTAAAACTACTTTCGGCTTGAGCCATTTTCAAGTGAAATATTTTGACGAGGACAACGAAGAGgTGTGCATAAACAGTCAAGATGAATATACAGAAGCTCTAAAGagtgCGTTTAAACAAGCCAACCAGCTCCACATGAATGTCTATAAGATGAAGGGTCAGGCAGAGGGTGGTGCAGTTAAGGCAGAGCTGAAGGAACTAAAGATAGACCCCAGACCAGCTCCGCCATATCGAGCTAGGGTCAAGATGGCAGACAAAGAGACCCAGGTGACCCCCGAGCGGGAATCGGCTGTGGCCAAAGAAAACAAAGGGATGAAAACTGAAGAAGAAGCAGTCCCCACTTGGTTTAAATCCTACATGGACAGGTTCAAAGACCAAGTGGTAAGGGAGGTGGTGGACAGGATGTGCAGTGAGTTTTCTGGCCAGTGTTGCACACACAGAGCCTCAGATCCTCCTGCAGAGGAACCAAGCACCTCTGGCACACAGAAACCAGTCAGCTCCACCACACTGAGGGCCTCTAGCTCAACTCCAAATTGCAGTAGTTGCAAAGGACCAGCCACTGGGGGAGGATATCAGTGCAGTGTTTGTCCATCTTGCATCTTATGCGAGCCATGCAGTCATAAACACGATCCCAGCCACAACCTAAAGAGAACAAGGACTCCTCTGTCTGTCCCTGAACGTGGAGTTACCCCTGAACCCAGGTTTCTGAGGCGGGGTGACAGGACGGTGAGAAAGGCGGAGAGGCAGCGTCTAAAAGCAGAGCGGAGGCAGCTGAAGGCTGAGGTGAAGGAGATCAAGAAGAAGCTGAGGCTGGAGAAGAGAGGTCTGCTGTGGAGTGGAGCCTCCAACGGGACCAGCACCTCAGGCCTTGCCCCCGCTCCCGCCCCGTCTCTAGGTGCAGGACCAGCCCCAGCTCCGGCCCTGTGCCCAGACCCTCAAACTTCCAGTCCAGAGGGTCCCAAGGTCTCCGGCTCCACCTTGGTGCCCACAATGACTGCCTTGTTTCTGGATGAGAATCTACCAGATGGCACTTGTCTGGAGCCAGGCACCAAGTTCATCAAGTACTGGAAGATGAGGAACACTGGCAACATCAGCTGGACTTCCGACACTAAGTTGAAGTTCATGTGGGGCAACCTGACCCTGGGATCACGAGAGCATAAAGAGGTCGCAGTGCCCTTTCTGCAGCCGGGGCAGGTTGGCGTGGTGAGTGTGGCGTTTGTGGCACCCCTGCTGGAGGGCACCTACACGTCTCACTGGCGCCTGGCACATTGTGGTGTGCAGTTTGGGCCCAGAGTGTGGTGTAGCATTGTGGTGGTGCCAAGCACAGGGCAGAAACCCAGCATCCACTGCAGCAAATCACTGCGGACTGATCTGTGTCTAATGGGGAAAGACGGCATGTTCTGGTCAGGCACCAGAGACTGTGAAGTGTCGGCCAGCTCCAGAAGAGAATACTGCATCCCCTCTGTTGACTTGCTGACAGCACAGGATCTGCTGTCCTTTGAGTTACTGGATATAAACATTGTGCAAGAATTGGAGAAAGTCCCAGCCAATGCTCCATCTGATATGACCTCCTGTGTATCTCCAACTCTTCACCATGGAGCTTTGTTTGGGAAGCACGGAACAGGACAAAGCAAAGTCGAAGTTGGACGTTCATGCAGGAAGAAAATTCAAGTCCTGCAGCCTCAGAGACAAAACGAGCTTCTGGATGTTCCAGGCAATGAGGAAGGAGACGAAGACATCAGTGGCACTCAGTTTGTGTGTGAGACTGTGATTCGCTCTCTGACTCTTGAGGAGGAACCAGAACGCAAACCTCAACGCAGAGCACGGCCCAGCCTGAGGAGGCATGATGTTCCAGATCCTGTTCGCTTAAAGGAGAGATCAGTGCCGGTGAAGAATGACAGACCAGTCATAAACAGGCCTGAGGCTCCAGTTCCTGTGTCAAAGCCAATCATAACAGATGAACCTGTCTTTCCAGTTTTTACAGAGGCATTGATTGGCTCAAATGAAAACCTCTACACCGACCCAGCTGCACAGGAGGAGAATGAAGAGGAAGCGGAACAAAAGGGACGTGAAAATGAgcaagaaaaagaggaagaagcAGGAGAGTGGGATGAGGTGAGCAGCCAGGTGTCCTCTGCCTCATCTGAGGACTACATTGTCATCCTGCCTGACTGCTTCGATACTTCCAGGCCCCTGGGAGAATCGATGTATAGCTCTGCAATGTCCCAGGCTGCAGTACCTCTTGCCAATGGGCCAGAGGCACCGCAAAACCCAAGCACGGCTGAAGGAGAGAATGAAGAGCCAAGCCCTGTCGCAGTTCTTCAGAACAGCCTGAACCGGATGCTGTCCACCTCTCAGATACTGGACACTCCTCCTCTGATTCCAGAGATGGTTCCTGTGCCTGTCGCTCTGTCACCACCCCCGTCTCTCCGAACACACAGATTAGTGAGATCTCATGATGTTGAGTCAGAACCAGGGGATGAGAACACCTCATGCCAACCCGAGGATGACTCAAGCGGTTGCAGATCAGCTCATTTAGAGGCCCCTGTTAGTGCCTTTGAGACCTGTGGCCCCCAGGATCCCCGGGCACGTAATGGTGGTCTGACGGAGGGGCTGGTGAAGGGAGCTCTGTCTGTAGCTGCTTCTGCTTATAAAGCACTGTTCACAGGCCAGAGCACACCTGCACAGCGGCCTGAAGTGGACCCAGCCTGTGAAGACGCCTCATTAATGGCTGTATTACAGGAGATGGGCTTCAGCAACCAGCCGCTCAACCAGAGGCTGCTGAGAAAGCATCACTACAACTTACTTGATGTGGTCAACGAGCTGGTGCAGTTGACCGACAGCGAATGGCACATCTCAAGACATTAGGAAGCACCGCCGCGACCTCAACGACGTGTAAGAATTGTAAATGATTTCATTGTGTTGCAGCTTTCTGTCAGAACAGGAGAAACACAGCTGATGTTTATTTGTTAGAGAGTCTGGAGAAGAAAAAGAGAGAACTATATCACTATAACTGACAGTAGCTGCAATGATGCAATTACTTGATTGTAAACTTTTAGTTTCATGTTTGTAGGACATTATGAATGGGGAAAATACACAAGGTTTATCAAAGGGAAATTTCACCatttaaaaaaggacattttctTCACTTACTCAGCTTGATTCAGACTCTTTTCAGATTCTTATTTCTGTtgggacacaaaagaagatactttgaagagtGTTGAAATTCAGTAGTCGTTTGCTCccatagtatatatatttttttcaatggccaacattctttaaaataccttcttttgtgttcaacaaaagaaagaaacttgtaaaggtttggaaccacttgagggtgagtgaatagtgagtaaatgttcattttttggtgaactgtccctctTTAAGCAGTCTTAACGCTACCTTTATTCAGTGCGTGTGCCCTACTAACCTGTTAGGTAGGCTTCAGGTAAATTTTGTACTGCTTGATTAGATATGATGATTAATTTGAAACAATACCAGAGGGTTTCGGTTTGTTTGAGCACTTTTGCCTCTTGGAGGAAAGCTATATAAAGAACAGCCTGTGTTGATTTTGTTATTTGTCACGGTGACCTTTATATTTGTATATCTTATTTTAAATCACACTACTTCATGCGTCACACTAAGGTATTGGGCTGCCAAACTTATAGGAATGTGCAATGAGTTTTTCAGTCATGCTTAACAcaacgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattggtcaaAGATTTTGCTATAGGCACCAATTTTGGTCATCTTTGTCATTTTCATGTGCAATGTATTATTATGAACTGAAGGCTTATCAACATGGCTTTTGTGTCCAACACAGTGAATAAAAACATTCCATTatca

Function

GO:

id name namespace
GO:0016236 macroautophagy biological_process
GO:0000407 phagophore assembly site cellular_component
GO:0043130 ubiquitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9112 Predicted to enable ubiquitin binding activity. Predicted to be involved in macroautophagy. Predicted to be active in phagophore assembly site. Orthologous to human NBR1 (NBR1 autophagy cargo receptor).

Ensembl:

ensembl_id ENSDART00000133048

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009402 lncRNA upstream 317117 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00010944 lncRNA upstream 379541 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00010943 lncRNA upstream 487952 26638127 ~ 26725781 (+) False XLOC_004750
TCONS_00010743 lncRNA upstream 521682 26691819 ~ 26692051 (+) True XLOC_004751
TCONS_00010941 lncRNA upstream 620435 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00009431 lncRNA downstream 1886 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00010945 lncRNA downstream 1147172 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00010744 lncRNA downstream 1387843 28617701 ~ 28617965 (+) True XLOC_004779
TCONS_00009458 lncRNA downstream 1703666 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00010946 lncRNA downstream 1712376 28942234 ~ 28946150 (+) False XLOC_004786
TCONS_00009422 mRNA upstream 6829 27156943 ~ 27206904 (+) False XLOC_004764
TCONS_00009423 mRNA upstream 6831 27156995 ~ 27206902 (+) True XLOC_004764
TCONS_00009420 mRNA upstream 70899 27141140 ~ 27142834 (+) True XLOC_004763
TCONS_00009418 mRNA upstream 81998 27129659 ~ 27131735 (+) True XLOC_004761
TCONS_00009417 mRNA upstream 84965 27127139 ~ 27128768 (+) True XLOC_004760
TCONS_00009427 mRNA downstream 1354 27231212 ~ 27237032 (+) False XLOC_004766
TCONS_00009429 mRNA downstream 1492 27231350 ~ 27236596 (+) False XLOC_004766
TCONS_00009430 mRNA downstream 1749 27231607 ~ 27236557 (+) False XLOC_004766
TCONS_00009432 mRNA downstream 2315 27232173 ~ 27236551 (+) True XLOC_004766
TCONS_00009433 mRNA downstream 13201 27243059 ~ 27245757 (+) True XLOC_004767
TCONS_00009421 other upstream 50669 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009419 other upstream 78766 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009383 other upstream 1565490 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 1735827 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1961946 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009428 other downstream 1437 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 1715674 28945532 ~ 28945646 (+) True XLOC_004786
TCONS_00009467 other downstream 1783715 29013573 ~ 29013690 (+) True XLOC_004791
TCONS_00009477 other downstream 2202217 29432075 ~ 29432191 (+) True XLOC_004797
TCONS_00009479 other downstream 2534185 29764043 ~ 29767260 (+) True XLOC_004798

Expression Profile

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