RNA id: TU107370


Basic Information

Item Value
RNA id TU107370
length 807
lncRNA type sense_over
GC content 0.46
exon number 3
gene id AMCG00021444
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17581242 ~ 17585441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGCGCTGTGCTATTTAAAGGCTGCTCGGTAACGCTGCGCACTCAGTCTTACCTTAACAAGGAATTTATCGAGGAATCGCCTGCTGACACTACAGACATCTGCCAACATGAGTGATAACAACCCTGTGAATGAGGAAGTGCAGAACTTTGACAAGAAGTGTCTAAAGAAGGCCAACACTAAGGAGAAGAACCCGCTGCCCACCAAGGAAGATATTGAGCAGGAGAAGAAGCAGTGCTGTGCGGAGGGATCCAAGTGAACAGTGCCTGCTCACACTCCTTCGCTGGGACACTTCTTCTGTCTGTCACTTTGCTTCTGTATTCCATCTCAACATGTTCACTTTAATGGCATCCAGACACCGGGGCACGTCGGGGAGGGGGAGGGTGTGTGGAAATACTGAGGTTTGTAGTTGGGGTGTTAGGGGCACAGTCTAAAGCCATAAAAGTATGCCACTGTATAAACCAATTACTGCTTTGTGATGAATTCTTGAAAGAGGGTgagggaggaagaaagagaTGAGGAAGAATGGAGGGAGGGGCCTGACGGCAACGGGGAGGATTTGCAGTGCTTGTGTGAGAATATCACCCAGACCGCATCAGCTCGCTCTGAATTCCACGTAATGCGACTTCTGTATCTGGTGCcgttaaattttttttttttttgttatactttaaagagttttttttttggtataaaataaaatcaaaatgttttaaaatttaaGCTGCTGTGTTTCTTTGCGGTGTCTGCTCATGCGTGTATGTATTGGCAGGTTCTGTTTAACATGATTCTGCTGTGCTTCTACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107354 lncRNA downstream 48413 17532608 ~ 17532829 (-) True G86013
TU107353 lncRNA downstream 54103 17526753 ~ 17527139 (-) True G86012
TU107339 lncRNA downstream 67622 17513197 ~ 17513620 (-) True G86000
TU107323 lncRNA downstream 104338 17476704 ~ 17476904 (-) True G85985
TU107315 lncRNA downstream 121301 17459727 ~ 17459941 (-) True G85977
TU107375 lncRNA upstream 48314 17633755 ~ 17633986 (-) True G86029
TU107551 lncRNA upstream 738050 18323491 ~ 18324025 (-) True G86154
TU107606 lncRNA upstream 964003 18549444 ~ 18549757 (-) True G86203
TU107634 lncRNA upstream 1007199 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 1037122 18622563 ~ 18623590 (-) True G86225
AMCG00021445 mRNA downstream 41529 17518381 ~ 17539713 (-) True AMCG00021445
AMCG00021446 mRNA downstream 63575 17512562 ~ 17517667 (-) True AMCG00021446
AMCG00021437 mRNA downstream 105609 17456860 ~ 17475633 (-) True AMCG00021437
AMCG00021435 mRNA downstream 281616 17286249 ~ 17299626 (-) True AMCG00021435
AMCG00021432 mRNA downstream 300441 17249632 ~ 17280801 (-) True AMCG00021432
AMCG00021447 mRNA upstream 3097 17588538 ~ 17589461 (-) True AMCG00021447
AMCG00021448 mRNA upstream 30864 17616305 ~ 17632305 (-) True AMCG00021448
AMCG00021449 mRNA upstream 52959 17638400 ~ 17683108 (-) True AMCG00021449
AMCG00021452 mRNA upstream 466551 18051992 ~ 18058166 (-) True AMCG00021452
AMCG00021458 mRNA upstream 512451 18097892 ~ 18109169 (-) True AMCG00021458
TU107350 other downstream 28476 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 28978 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 157824 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 277772 17298880 ~ 17303470 (-) False AMCG00021435
TU107075 other downstream 931417 16647139 ~ 16649825 (-) False AMCG00021412
TU107397 other upstream 340658 17926099 ~ 17926708 (-) True G86049
TU107532 other upstream 662220 18247661 ~ 18248894 (-) True AMCG00021460
TU107653 other upstream 1236092 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 1675504 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 1689913 19275354 ~ 19278023 (-) True G86327

Expression Profile