RNA id: AMCG00021445


Basic Information

Item Value
RNA id AMCG00021445
length 1197
RNA type mRNA
GC content 0.65
exon number 7
gene id AMCG00021445
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17518381 ~ 17539713 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCTGCAGCCTGTGGCTGTACGTGTCTCCCAAGAAGCAAGTTGTGGCGGAGCAGCGACCAGACTCGCCCCTGAAGTGGTGCCGCCGGGTGCTGGACCACCCCAGCCCGGAGACGGAGCTCGCCTGCCGCAGCCTCATCTACCGCCTGGACCACTCTGTGCAGAGAGGTGGGAGGGCCTGTGAGCTGCCGGCAGCACGATGGAAGAACATTTACAGCAGCCCGTCCTCTCAGTGCGCGCTCAGCTCTGCCCCTGAGGCCTGCGCCTCTGGCTCTGCCTTACACTCCCCTGGGTACCACAAATCGACTAACAAATCACTACTAACGTGTGGCAACTCAGGTTACATGAGCATGCACTCGGCGCTGAGCTCGCAGTCTTCCATAGACAGTGAGCTGAGCACCTCTGACGACTCCATCTCCATGGGCTACAAACTGCAGGACCTGACCGACGTGCAGATCATGGCAAGGCTGCAGGAAGAGAGTGAGTCTGCCACCCCGCCCCGCCCTGCACAGCACTGTGCTGACTGCCGCCTCACAAGGCTGCTGCAACACAGCAATGCGGGAGAGAGGGACCTTGACTATGCCTCCAGCTCGGCCTCTGTCTCTCGCCGCAGCTCCAGTGCCTCCCTACAGTCACTGCGCCGCGGCACCTACAGTGACCAGGAGTTCGACACCTACAGCTtggaggacgaggaggacgaCTGCTGCCACTCTTACCGTGGGCACCGCTGCTCCCCATCCCCACTCAGCTCCCCACGCTGCCAGTCCCCCAGTGCCCTGGCAGAGTACAGCCGGGTCACTGCCCAGCGCGCCCGCCCTCCCCGCCGCTCCCTGCAGGGCCCCGGCCCTGAGCTGCTCAAGTTTGCCAAAAGCGAGGGTGTGTCCTCTTCCCGGCTGCGTGGCAGTGCCCAGTCCCCGCTGTCACTCCGTGCACCAGTCAAAGCCCTGGGGCCTGTGGGATCCATGGCAGGGGCCCGGCAGTCTCAGAAAGGAGCCACTGCCATGGGTGGGGCACGCAGAGCCCAATCTCCAGCTTGCTCCAGCTCTGGATCCTCCAGCGGTGGGGTGATCTCGGCCAGCCGTGGGAGTGCCACAGGAGGGGGCAAGCAGACCCCCAGCCGGACTCGCTCTTCCCTGGGGGGGACCTCAACATCAGCTTCGCCCAGGGGCAGACTGGCCCAGCCCTCCAGGAGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107339 lncRNA downstream 4761 17513197 ~ 17513620 (-) True G86000
TU107323 lncRNA downstream 41477 17476704 ~ 17476904 (-) True G85985
TU107315 lncRNA downstream 58440 17459727 ~ 17459941 (-) True G85977
TU107288 lncRNA downstream 99833 17417997 ~ 17418548 (-) True G85952
TU107266 lncRNA downstream 227520 17248967 ~ 17290861 (-) True G85938
TU107370 lncRNA upstream 41529 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA upstream 41529 17581242 ~ 17585441 (-) False AMCG00021444
TU107375 lncRNA upstream 94042 17633755 ~ 17633986 (-) True G86029
TU107551 lncRNA upstream 783778 18323491 ~ 18324025 (-) True G86154
TU107606 lncRNA upstream 1009731 18549444 ~ 18549757 (-) True G86203
AMCG00021446 mRNA downstream 714 17512562 ~ 17517667 (-) True AMCG00021446
AMCG00021437 mRNA downstream 42748 17456860 ~ 17475633 (-) True AMCG00021437
AMCG00021435 mRNA downstream 218755 17286249 ~ 17299626 (-) True AMCG00021435
AMCG00021432 mRNA downstream 237580 17249632 ~ 17280801 (-) True AMCG00021432
AMCG00021425 mRNA downstream 475874 17035957 ~ 17042507 (-) True AMCG00021425
AMCG00021444 mRNA upstream 41614 17581327 ~ 17585399 (-) False AMCG00021444
AMCG00021447 mRNA upstream 48825 17588538 ~ 17589461 (-) True AMCG00021447
AMCG00021448 mRNA upstream 76592 17616305 ~ 17632305 (-) True AMCG00021448
AMCG00021449 mRNA upstream 98687 17638400 ~ 17683108 (-) True AMCG00021449
AMCG00021452 mRNA upstream 512279 18051992 ~ 18058166 (-) True AMCG00021452
TU107289 other downstream 94963 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 214911 17298880 ~ 17303470 (-) False AMCG00021435
TU107075 other downstream 868556 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other downstream 868556 16647139 ~ 16649825 (-) True AMCG00021412
TU106928 other downstream 1275726 16241004 ~ 16242655 (-) False AMCG00021387
TU107350 other upstream 7449 17547162 ~ 17552766 (-) True G86010
TU107351 other upstream 7449 17547162 ~ 17552264 (-) False G86010
TU107397 other upstream 386386 17926099 ~ 17926708 (-) True G86049
TU107532 other upstream 707948 18247661 ~ 18248894 (-) True AMCG00021460
TU107653 other upstream 1281820 18821533 ~ 18909908 (-) True G86241

Expression Profile