RNA id: AMCG00021448


Basic Information

Item Value
RNA id AMCG00021448
length 864
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00021448
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17616305 ~ 17632305 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGAATATAAAGATTTTCAGCGGGAGCTCTCACCAGGACCTGTCCCAGAAGATCGCCGACCGACTGGGACTGGAGCTGGGCAAAGTGGTCACTAAAAAATTCAGCAACCAGGAGACATGCGTGGAGATTGGGGAGAGCGTGCGCGGCGAGGACGTGTACATCGTGCAGAGTGGATGTGGCGAGATCAATGACAACCTGATGGAGCTGCTGATCATGATTAACGCGTGCAAGATTGCTTCAGCCTCCCGCGTCACTGCAGTCATCCCCTGCTTCCCCTACGCACGCCAGGACAAGAAGGACAAGGTGGGGGGCTTCTTCGACATCCCCGTGGACAACCTGTACGCTGAGCCAGCCGTGCTCAAGTGGATTAAGGAGAACATCCCTGAGTGGAAGAATTGCACCATCGTGTCTCCTGACGCTGGGGGCGCCAAGAGAGTGACCTCCATTGCAGACCGGCTCAACGTGGATTTTGCGCTGATTCACAAGGAGAGGAAGAAGGCAAACGAGGTGGACCGCATGGTGCTGGTAGGGGACGTGAAGGATCGTGTCGCCATCCTGGTGGATGACATGGCTGACACCTGCGGAACCATCTGCCACGCAGCAGACAAACTGCTGTCGGCTGGGGCCACCAAGGTGTATGCCATCCTGACCCACGGCATCTTCTCTGGCCCGGCCATCTCCCGAATCAACAACGCATGCTTCGAGGCTGTGGTTGTCACCAACACCATCCCGCAGGAGGACAAGATGAAACATTGTCCCAAAATACAGGTTATTGACATCTCCATGATCCTGGCAGAAGCCATCCGCAGGACACACAACGGAGAGTCAGTCTCCTACCTCTTCAGCCACGTTCCTTTGTAA

Function

GO:

id name namespace
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0004749 ribose phosphate diphosphokinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107370 lncRNA downstream 30864 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA downstream 30864 17581242 ~ 17585441 (-) False AMCG00021444
TU107354 lncRNA downstream 83476 17532608 ~ 17532829 (-) True G86013
TU107353 lncRNA downstream 89166 17526753 ~ 17527139 (-) True G86012
TU107339 lncRNA downstream 102685 17513197 ~ 17513620 (-) True G86000
TU107375 lncRNA upstream 1450 17633755 ~ 17633986 (-) True G86029
TU107551 lncRNA upstream 691186 18323491 ~ 18324025 (-) True G86154
TU107606 lncRNA upstream 917139 18549444 ~ 18549757 (-) True G86203
TU107634 lncRNA upstream 960335 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 990258 18622563 ~ 18623590 (-) True G86225
AMCG00021447 mRNA downstream 26844 17588538 ~ 17589461 (-) True AMCG00021447
AMCG00021444 mRNA downstream 30906 17581327 ~ 17585399 (-) False AMCG00021444
AMCG00021445 mRNA downstream 76592 17518381 ~ 17539713 (-) True AMCG00021445
AMCG00021446 mRNA downstream 98638 17512562 ~ 17517667 (-) True AMCG00021446
AMCG00021437 mRNA downstream 140672 17456860 ~ 17475633 (-) True AMCG00021437
AMCG00021449 mRNA upstream 6095 17638400 ~ 17683108 (-) True AMCG00021449
AMCG00021452 mRNA upstream 419687 18051992 ~ 18058166 (-) True AMCG00021452
AMCG00021458 mRNA upstream 465587 18097892 ~ 18109169 (-) True AMCG00021458
AMCG00021457 mRNA upstream 477313 18109618 ~ 18148550 (-) True AMCG00021457
AMCG00021456 mRNA upstream 520700 18153005 ~ 18165667 (-) True AMCG00021456
TU107350 other downstream 63539 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 64041 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 192887 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 312835 17298880 ~ 17303470 (-) False AMCG00021435
TU107075 other downstream 966480 16647139 ~ 16649825 (-) False AMCG00021412
TU107397 other upstream 293794 17926099 ~ 17926708 (-) True G86049
TU107532 other upstream 615356 18247661 ~ 18248894 (-) True AMCG00021460
TU107653 other upstream 1189228 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 1628640 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 1643049 19275354 ~ 19278023 (-) True G86327

Expression Profile