RNA id: AMCG00021449


Basic Information

Item Value
RNA id AMCG00021449
length 4857
RNA type mRNA
GC content 0.61
exon number 14
gene id AMCG00021449
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17638400 ~ 17683108 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAATGATTGCAAGACAGCAGGCAGCCCCCCCAGTGAGACAGCGCCCTCCCCTTGTCGCTCTGCTCAGGGGATGGCCCAGCTGCAGGATGGACAGTCAGACGCATGTGGAAGCCCTGCAACCCCAGAGGAGGTGTCTGATGGTATGGACAGTGCTAGCCTGACTCCTGGCACAGCTCGACAAGTCTCCCTTCAGCGCCACCCCAGCCACGGATTCGGTTTCGTCGCTGGCAGTGAACGGCCCGTCATTGTGCGCTCTGTCTCCCCAGGTGGTCCCTCAGAGGGGAAGCTACTCCCTGGAGACCAGATCCTCTGCATTAATGAGGAGCCCATGAGCGACGCCCCCCGAGAGAGAGTCATAGACCTTGTAAGGAGCTGCAAGGAATCCATTGTGCTCACCGTATTACAGCCTCACCAGACCATGCTGAAGGACGACGCTCTTCTGCTTATCCCCAATGTTCTCAAGGTGTTCCTGGAGAATGGACAGATCAAGTCCTTCACTTTCGACAGCCGGACCACTGTCAGGGATGTAATGTCATCTCTGCAGGACCGGCTGTCCCTGCGCTACATCGAGCACTTCGCCCTGGTGCTGGAGTCCGGCGGGCTCGACCAGAACCACCGGCTACACCTGTTGCAGGAGACCCAGCCGCTTTCCCAGGTAGTGCAGAGGACCTATTTCCAGGGGATGAAGTGTCTGTTCCGTATCTCTTTCTTCCCCAAGGACCCTGCAGACCTGTTGAGGAGGGACCCTGCGGCCTTTGAGTATCTCTACATCCAGAGCCGTAATGATGTAATCAAGGAGCGGTTTGGTTCGGACTGGAAGTCTGACATCACACTGAAGCTGGCAGCGTTGCACATCTACATCACTGTGTCTGCCGCCAGGCCTAACCAGAAGATCTCCCTGAAGCATGTGGAGAAGGAGTGGGGACTGGAGCCCTTCCTGCCTCTTACCCTCCTGCCCACGGTTAAGGAGAAGAATGTGTGCAAGTCCCTCTCTCAGCTGCTCAAGACCTACCAGCACCCTCCCCCCTCTGGGAACAAGGATGAGAAGCAGTCAGCCACCACTCTCCTGGTGGGACCACGTCATGGGATCAGTCATGTCATCGACCTGAAGACCCACCTCACCACAGTCCTGGCCGAGTTCAGCCGGGTCGCCAAGATCCAGCTGTTCAGGGAGACCCAGGGCGTGGCCCGCGTGGAAGTTGGTATTCTTGAGGGCAAGCCTCTGGTGCTTCTCATGGAATGGCCAGATGCCACAAACTTTGCCTGTCTGATCTCTGGCTATTACAAGTTGTTTGTGGACcccaagaaaaatattttctgtcgGACACCTGGTCAGTCCCACATGATCAAGGCAGATTACAGAAGTGCCCACGCTGTCCCGAGACCTGTGCCCTCCGCCCCAAGCAGCAGCAGGCATGGGGAGGAGGCAGCAGTCAGAGAGGGGCTGCCCAGAGACTCGGGCCAGAGGTCAGCTGGACACTCAGACCCCCTGGGCTTCTGCTACCTTCACATGAAAGAGCAGCACCAACAGCATCAGGATGAACACATGGACATCAACAAGAACCTGATCTCCAGAGAGGAAAGCAGGCCGCGCACAAAGTCGGACCCCACCTCCAAGAGCTCGGAGTCCTTAGCCGTGCCTGAGAGCCCGTCGCTGGTCCGGGCAGctatgggggtgggggggcgggccCGAGCGTACACTCTGGAACCTGGCCAGCACCCTGGCAGATTCTTCTGCGACTCCTGCAAGGCCAGAATGAAGGCGGCGGCGGCAGGGGCAGTGGGGACGTCAAACGGGAGCTCTCCACAGCTGCAGGTCCCACGTCAGCGCTGCACCCAATCCTGTGCATCCCGGGAAGGCGGCGCCGTGGACCTCATCTCCTTGCCCCCACCCGGGAGTGATgaggatgaagaggaggagggggagggaggagctATCCAGCCACCACCCCCCGCCATCGCCGCACCACCGCCTGGTTTCCGTGACAACAGCTCGGATGAGGACGACCCTAAGAGACGGGCAGcggcagctgcagcagcagtggcGGGGGCTACTGGGCCGTTGCCCATGCAGAGGAGGCTGCCACCTGAGGAGGTGCCAGTGACGCTGATCGACAATGTGGCCACGCGGACAGTTCGAGATCATGCCCAGGAGCTGGATGATGCCCTGGTGTCCACTCTGCAGGCTCTGGAGGCCCTGGCTGCATCTGAGGActacccccaccaccaccagcagccCCCGCAGACCGCAGGTCTGATCGTGCTGGCGGCCATAACGCCTGAGTCGTCGCTGGACTCCGGACATGAGACCAACTCCTCTGAACTAAATGATATGTCTGAGATGATGTCCGCCATGAAGCAGCACCAAAGCCAGGCCTACCTGTTGGCCCACCACATCAACAAGGAGCGCATCTTCAGCCGCTGTGACTTTCCCTTAGCTATCTCTGGCTGCACGACTCAAGCCCTGGGTGGGGCAGCCTTCTCCGTGGGCCAGCTGTGCACAAGCTGCCCTCCCAAGCCCCTTGTCCTCACCAAGAGCACCCCACTGAAGGTCAGCCCGGGCCAGGAGACCCCCACCTCCACAGGGGAGCAGGGGAGGAACCAAGACCTTTCCCAGAGCCCCCAGAACCCGGGAAAGCTGGACTTGAGTGTTGCGAGCACACCTGGGGCTCTCTGTGACTCTGGTGCCTCTCCTTCTCAAGCCTCTGGGGATCTCAAACATGCCAGCCAGGAGCAGAGGAGCCAGGCCTCCATGGACCTGAAGGTGCTGAGTAATGCGGAGGGCAAACTGAGTCCTACTCCTCCCACAGAGGCAAAAGGAAAAGTCTCTGGTACCACCAGCCCAGAAATTACCAGCAAAGCCTTACCCATTCTCCTGCCTGTGGACAGTGCCATTTCTGCCAAGATTCGACAAACTAACACGTGCCAAGATGCCGAGGCTGCCTCTAGGAAGACCAACAAGCCTTCCAGCTCTAAGGGCATGCTGCCTACTGGGGAGCTGTTCTGCACCTGCCCTGTGCAGCCGGAGCCAGGGGCCCCGCTGCGTCTCAAGGACCACCAGGCCCAAAAGGTGGTGGTGTTCCACTCCTCCTCGCCGACTGATGATGAGCGACTGCGTGCCAAAGCCAAGGGGCTGTACCTGGCCACCAGCAAAGAAAGCGCAGTGAGGGGCACAGGGACAGAGCCAGGCCACAAGCCTGGCCTCCTGGGCCCACCCAAGTACTCTGCACTCAACCCAGAGAAGAACCTGCTGTCCGCCACCTTCCCTGCCCGACTGCGCCGCGAGACAGATGAGCGGCAGGCCCAGTTGCAGAAGGTCCGGCAGTATGAGCTGGAGTTCCTGGAGGAACTCCTGAAACCCAAAACGGCACAGGTGGAGTTCCTCCCCCAGGGCGCCTCCCCAATTCCAGCAGGCACGCCCTGCCCCTGCCAACTGCGTACCAGCCCCGTGCAGAAAGTGCCCGGCATCTCCCGGGAGCAGCGCCGGAGCTGCGACTGCAAGAGAATATGCCGGGGTATTCGACTGCCTGACACTCCCATAGGAACAGccctggagaggagaggaagggagaggacTGTCAACAAGCCCATACCTGTCCCTGCCATCCCCAAGCCCCCCCAGCAACAGGAAGACCTCAGCAGACCCCAGACATTGGAGATCAAGACCACTCGAATCCGCTCCACCAGCCTAGAGTCCCGGGAGCCCCGAGAGCAGCCCATATCCTGCCTGCCCACCTGCACCTCACGCTCAGAGTGCATGGGGGCACCACAGTACAAGAAGCTCCTGCGCCGCTACAGCATCAGTGAGGCAGACAGCAATGAGAGAGTGCCCCTGTACGCTGAAGTGAAACCCACCAAGACCAAGAGCCTGGAGAAGGGAATGGAACGAGCCAGGACTGCAGCCTCCAAGCAACCGACCCCTGTGGAGCCCTCATACGCACAGCTGGGGGAAGGGAAGAGGAAGGCAGTGTTCTCCATCCAGTCAGAGGCGGCAAGAGAGCTGGAGCTGCTGCGCGAGGGCCAGGTTGGGGTAGGAGAGGGTGTAGTGGGGCTtccaggagaggaggaggatggcAGGGAGAAGTGCTGCTCCTTCTGTTTCTGCTACCGCAAGTGTGAGGTGACGGACGAGAGCAGCGAGAAGGATGAGCTCTCCTACTCCATCCCACTGCAGGTACTGCCAGGGATGCAGTTGGATGCCAACACCGTTCCCGTAGTCAGCAAGACCTTACAAGTGCTGGATGCGGATGGCTGTAGTGGCGAAGAGGAGCCGCAGAGCCAGGAGATTGACCTCCGCAGCTCGGGTACGCTGGAAGGCAGCCTGTCGCGGGTGCAAGCTCTGCAGGGCAAGACCTTCTCGCTGCCTGATGGCTTCCTCAGTGCCCAGCTGGACGCCAACGAGCTGCTGGCCATCCTGCGGCAGTGCGCAAGCAGCCCCCAGCCAGAGGATGATCCCAGGCTGCTGGCGCCCCGGCTGGTAGAGTACAAGAAGGAGTTGGCACTGAGGTTCAAGGAGTTCCGGGCATCATGTCGGCGGGTGGCAGGCGTGGAGAAGAGCCCCACGCGCATGCTGAGTGCCGTGACCTCCAGCTTCCAAGTGCTGTGTGCGCTGACACAGACCTTCATCCGGCTGGTGCGTGGGGTGCGCTCCGAGGCCCAGCGACTAGAGCTGCTGAGGAAGGTGGAGGAGGTAGCCCTGAACTACACCTTCCTCCTGCGGGCTGCCGAGGAATCCATGGGCCGCTCCAGCAGCCTGCCCACCAAGACCAGCAGCGCCGTCACCCCGCCACCAGCTCCCGGAGGCACCATGGCAGGCTCCCTCACTCGTTCTGTGAAGATCCTCATCGCCAAGTAA

Function

GO: NA

KEGG:

id description
K23959 FRMPD3; FERM and PDZ domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107375 lncRNA downstream 4414 17633755 ~ 17633986 (-) True G86029
TU107370 lncRNA downstream 52959 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA downstream 52959 17581242 ~ 17585441 (-) False AMCG00021444
TU107354 lncRNA downstream 105571 17532608 ~ 17532829 (-) True G86013
TU107353 lncRNA downstream 111261 17526753 ~ 17527139 (-) True G86012
TU107551 lncRNA upstream 640383 18323491 ~ 18324025 (-) True G86154
TU107606 lncRNA upstream 866336 18549444 ~ 18549757 (-) True G86203
TU107634 lncRNA upstream 909532 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 939455 18622563 ~ 18623590 (-) True G86225
TU107652 lncRNA upstream 976190 18659298 ~ 18663129 (-) True G86240
AMCG00021448 mRNA downstream 6095 17616305 ~ 17632305 (-) True AMCG00021448
AMCG00021447 mRNA downstream 48939 17588538 ~ 17589461 (-) True AMCG00021447
AMCG00021444 mRNA downstream 53001 17581327 ~ 17585399 (-) False AMCG00021444
AMCG00021445 mRNA downstream 98687 17518381 ~ 17539713 (-) True AMCG00021445
AMCG00021446 mRNA downstream 120733 17512562 ~ 17517667 (-) True AMCG00021446
AMCG00021452 mRNA upstream 368884 18051992 ~ 18058166 (-) True AMCG00021452
AMCG00021458 mRNA upstream 414784 18097892 ~ 18109169 (-) True AMCG00021458
AMCG00021457 mRNA upstream 426510 18109618 ~ 18148550 (-) True AMCG00021457
AMCG00021456 mRNA upstream 469897 18153005 ~ 18165667 (-) True AMCG00021456
AMCG00021459 mRNA upstream 513029 18196137 ~ 18226215 (-) True AMCG00021459
TU107350 other downstream 85634 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 86136 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 214982 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 334930 17298880 ~ 17303470 (-) False AMCG00021435
TU107075 other downstream 988575 16647139 ~ 16649825 (-) False AMCG00021412
TU107397 other upstream 242991 17926099 ~ 17926708 (-) True G86049
TU107532 other upstream 564553 18247661 ~ 18248894 (-) True AMCG00021460
TU107653 other upstream 1138425 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 1577837 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 1592246 19275354 ~ 19278023 (-) True G86327

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1413116 True 4538 TUCP 0.47 1 NC_048578.1 32320018 ~ 32324555 (-)