RNA id: AMCG00021450


Basic Information

Item Value
RNA id AMCG00021450
length 2622
RNA type mRNA
GC content 0.61
exon number 9
gene id AMCG00021450
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18061621 ~ 18067774 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGTCGgcggctgggctgggctgggctgcgCTGCGCGGGGCTGCAGCGCTTATAAAGCGGGACAGAGTAACGTGCGCTCAGTCAGCCCGGAGCCTCCGCTGCAGCGCGACGCGATGACAGAGCCGCGGGTCGAGATAGAGTCGCTGCACTTCTCTGTTGGCATACTAGGCATCTCTGGAGggtctctgctgctgctggtcaATGGCTACAGCCACAGCCCCAGTGAAGCCCTCATCCACAGCACTGCCCTGGGCATCCTCCTGCTCATCATCGCTGCCCTGCTGGCCTACGCAGGTGTGCGTCGCAGCCTGTGTCATGCCCCCCTGTTCGTATGCCTGTGCCTGACCATCTCTGCGCTGTGGTGCGGCTCAGGGCTGGTGCACATCCTGCATGGTGAGGGGGTGGTGCAGGGGGAGGAGGGCCTACGGGGGGCACTGATCCCAGGGCTGGCTGCCTTCACCCTGGCACTGCTGGTGATTGGTGTGGTGGGCGTTCTGTGCAAGGAGGTGGTTTTGTCCATCATCGCCTTCTCTGTGTGCCTGGCCTGCGCACACCAAATAGCTGGGCTATATGACCCCAGCTTCGGCCAGGGAGCCTCGGCCGCCAGCTATCTACTGGTGTGCTTCCTGGGGGCGTACTTCGGCACGGGGCGGCTGCTCTCCTACATCACCAAGGGGAAGGTACAGCTGCCCGGCACGCGCTCTGAGAAGAAGGCCAAGCTGACTGCAGCACAGGCTCAAGACCGCAATGACGTTGTGACCGCCGGCTTGGTCGGCAACCTGCTGTCCGCCACTGTGCTGGCCTGCCCTCTGCTGGGTGTTGTGCCTGCTCTGGTGCCTGGGCAGGTGCCCTGGCTGTGGACGGCTGGTGTGCTGCAGCTGGGTGTGTGCATACTCTCCTACCGCGCTATGGATACCCTGGCCGCAACCTTCTATGGCTTCACTGCGGTACTGAAGTTTGCAGAGGGTTACAGCCTCCTGTTGCCAGTCTGGGAGCTCCAGGTGCTCTTCTCCCCTGTGCCATTGCCCACTGTGTTTGCAGTGCTGTTCTTCATGTTGGCTCTGTTCAGCACCCAGAAGAGCCTGGCAGATGGGCTGTACCAATTGTTCTATGTTGCATACTGCGTGGCCCTGGCTGCCCAGCCGCGGGGGTTCTTCCAGGGCGGGACGCAGGGCGTACAGGCGGCCATCTTTGTGGTGTCCGCTGTGATGCTGCTGCTCACCTTGCACAACATGGCCTGCCCCTGGAGGTTACCCACAGGGGAAGGGCTGCTACGCTCACTACTGTCCCGCACCAACCTGCTGACCCTGCGGCCCCTGGACAAGGACCTGCATGCCCCCTACCTGGGCTACTCCAAGTATGCAGATGCAGAGGTGTTGGGCCATGGCTGCAGCGTTCTGTCCGCCTTCGCCATAACAGCCACTGTGGGCTCCGAAGGGCCGTTGGCATTCTTGGTGCTGCCCTGGGTGGTGGTGGCAGGGGGGttgctgcagctgctgtgtgGCTCAGTGGCTTTTGCCCGGGGCAAGACCCTTGAGAGCACGGCCTTCATCTTGTACGGCATCATGTGGGCGGTGTGGGGGCTGACGCGCTACGGCGGGCTGTACGGTGCCACCCGTGGCTTCAATGTGGCAGTTGGCATCATCTGCTTCCTGCTGTTCAACTGCTTCATCACAGGCGGCGCACTGTTCCTCAGCAAGGCCTGGTTCGCCTATGCACTAACATTCCAGCTCATCCTGGTCAGCTTCCTGCTGGACACGCTGGGCACCCTGCCCTACGGCTACGACATCGGCGTCACCATCATCTTTGGCCTGGTCAGCTTCTACTGCTTCCTGGCCAACCTGTTCAACAGCAGCTTCCAGAGCCCACAGCTACCCCTGGGCACCCCGTTTTTCCGGCTGAGTGGCTACGGCGGTGGTGGCGAGCACTGCCCCCATGTCCCCGCCAGGAAGGCCACTTCCGTGCAGCAGATCGCAGAGATCATGAAAAATGGTGGGACGTGTGGAATGCCCACAGACACAGTGTACGTCCTGGTGGCAGCATGTAATCGCCCCGATGCAGTGGAGAAGGCGTACAACATCAAGCAGCTAGAGCCAGCCAGACACCTGCTGAACCCTGTGCTGTGGGACTTCATGGAGGCTGCTTGGCCCTCCTCCATCAGCATGGTCATCCCCAGAGGCCCATGGATGGACTGCTTTGGCCTGAAAGACTCTGCAAAGTACATCGGCACCCCCACCAGCATCGCCATCCGCAACCCCGATTGCACGGTGGCCACACACCTCATCGACCTGGCTGACACCACGCATCACAACCAGGTGTACGCCAAGCTGGGAGATAAGgtagACGGGGTGCTATGTGATGGCCCGTCGCCAGAGAACATCGCCTCCACAGTGGTGGACTGTACCAAGATCGAGAGCGGGAACATTGGCTTCTTCAGAGTTGGCATCTTCCCCAAGTCCCAGgtGCTACAGATCTTTGAGGAGGTGCAGAGAAAGCACATGTCCGGCAAGGTGAACCCCACCTTCGAGCCGGACTCCCCGGAGCACAGCGAGGCCGCTGAGGAAGAATCCCAGCCACAGGAGGCCCTTGACACAgtgaaggaggaagaggaggaggagtag

Function

GO:

id name namespace
GO:0004055 argininosuccinate synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107381 lncRNA upstream 413090 17648274 ~ 17648531 (+) True G86034
TU107364 lncRNA upstream 445168 17614614 ~ 17616453 (+) True G86020
TU107359 lncRNA upstream 476149 17581307 ~ 17585472 (+) False G86018
TU107362 lncRNA upstream 476908 17581307 ~ 17584713 (+) True G86018
TU107347 lncRNA upstream 528801 17532619 ~ 17532820 (+) True G86007
TU107502 lncRNA downstream 155061 18222835 ~ 18226242 (+) True G86117
TU107503 lncRNA downstream 161691 18229465 ~ 18229666 (+) True G86118
TU107605 lncRNA downstream 481654 18549428 ~ 18549759 (+) True G86202
TU107625 lncRNA downstream 547396 18615170 ~ 18618556 (+) True G86217
TU107639 lncRNA downstream 595419 18663193 ~ 18664533 (+) True G86227
AMCG00021451 mRNA upstream 11217 18033191 ~ 18050404 (+) True AMCG00021451
AMCG00021440 mRNA upstream 554491 17494793 ~ 17507130 (+) True AMCG00021440
AMCG00021439 mRNA upstream 568962 17483091 ~ 17492659 (+) True AMCG00021439
AMCG00021441 mRNA upstream 589887 17470366 ~ 17471734 (+) False AMCG00021441
AMCG00021442 mRNA upstream 625023 17430466 ~ 17436598 (+) True AMCG00021442
AMCG00021453 mRNA downstream 41304 18109078 ~ 18112221 (+) True AMCG00021453
AMCG00021454 mRNA downstream 100073 18167847 ~ 18170544 (+) True AMCG00021454
AMCG00021455 mRNA downstream 109406 18177180 ~ 18188162 (+) True AMCG00021455
AMCG00021463 mRNA downstream 270282 18338056 ~ 18387523 (+) True AMCG00021463
AMCG00021465 mRNA downstream 421129 18488903 ~ 18540148 (+) True AMCG00021465
TU107177 other upstream 1057490 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 1347583 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 1399739 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 1468648 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 1988003 16063600 ~ 16073618 (+) False AMCG00021373
TU107506 other downstream 180716 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 1211991 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 1432026 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 2274836 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 2310649 20378423 ~ 20380424 (+) True G86616

Expression Profile