RNA id: AMCG00021452


Basic Information

Item Value
RNA id AMCG00021452
length 1431
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00021452
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18051992 ~ 18058166 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCACTCCAGTGTTCCGAGCGGAGACATAAATAGCAGCTGAGCAGTCGGCCAGGCTCAGAGCCGTCTTCACAACTAGAGCACACCGACTCAGTGCCAACGCCCAGCGGTCCACTGAACCTTTTCAAGCAGcaatGGTGAAGCATGTGGCTGTGTTGCTTTCTGGCTGTGGGGTGTATGACGGCAGTGAGATCCATGAGGCGTCTGCTGTGCTGGTGCACCTGAGTAGGGTGGGGGCCAAGGTCCAGATGTTTGCACCAGATGTGCCCCAGATGCACGTGGTGAACCATGTGGAGGGCAAGCCCACGGAGGAGCAGCGCAATGTACTACAGGAGAGTGCCCGTATTGCCCGTGGAGACATCGATGACCTTGCCAAACTCAACCCTGCCACCCATGATGCTCTCATCATTCCTGGTGGTTTTGGTGTCGCCAAGAATCTGAGCTCCTGGGCCACGCAGGGGAAGGACTGCATAGTGCAGCCGGGCGTAGAGCACGCCATCAAGGCCTTTCACAGCGCTGGCAAACCTTTGGGCCTCTGCTGCATCTCCCCTGTCCTGGCTGCCAAGATCCTGCCAGGCTGTGAGGTTACCATGGGCCATGACACAGAGTGTGAAAAGTGGCCCCATGCAAAAAACACCTCTGCTGTGAAGGAGATGGGCTGCAAGCACGTGAACAAAAATGTGGGGGAGGTGCACATTGATGTCAAGAACAAGCTGGTGACCACAAGTGCCTTCATGTGCAATGCCCCACTGCATGAGGTCTTTGATGGTGTGGGTGTCATGGTGACTGAGGTGCTGAAACTGGCCTAGAGACTGTAAGGGCTGTAGGGGACAGATGTTGAGTTTTGTTCCTGCCTTGCTCGGATttattccaaaatgttttcCCACATTTATGGTTTGGTGCATCTTCAATAAACTATTCAGAACAATGACTCGGGCTTGGTCTGTTGAAACTGCAGGCTGCCAAGTGCCTTTTCTTTCAACACTAAAGCCATTTCTGCACAGGAGTTCTATAAATTCTTTCTGCACTAGACAAGATGTGATGCATTGAGTCTTACCCAGGTGTGAGCTTCAGCTAAGACcctaatatattataataattatatatattaaaaaaaaattcccccccaccccctctcaaAGTTGAGGCATAATTGCACACGATGTGTGAGATGTAAAAGCATCTATGTACACTCCTaactatataataaataactaatgtaACAAGCTGCACTAAGCTTTGTGAAACTCCTCTAATGTCAGACACGCATGGATCTCTGGCTGCTGCAGGATGTGACTGACTTGacactaaaataaaacctttgttCCAGGAAAGTGTGTGTCAATGAggtgtattacatttattgtgataaatggtaaaaaaaaaaaaaaattaaagctgGGTAGTGCGATTACAGCATACATGACTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107375 lncRNA downstream 418006 17633755 ~ 17633986 (-) True G86029
TU107370 lncRNA downstream 466551 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA downstream 466551 17581242 ~ 17585441 (-) False AMCG00021444
TU107354 lncRNA downstream 519163 17532608 ~ 17532829 (-) True G86013
TU107353 lncRNA downstream 524853 17526753 ~ 17527139 (-) True G86012
TU107551 lncRNA upstream 265325 18323491 ~ 18324025 (-) True G86154
TU107606 lncRNA upstream 491278 18549444 ~ 18549757 (-) True G86203
TU107634 lncRNA upstream 534474 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 564397 18622563 ~ 18623590 (-) True G86225
TU107652 lncRNA upstream 601132 18659298 ~ 18663129 (-) True G86240
AMCG00021449 mRNA downstream 368884 17638400 ~ 17683108 (-) True AMCG00021449
AMCG00021448 mRNA downstream 419687 17616305 ~ 17632305 (-) True AMCG00021448
AMCG00021447 mRNA downstream 462531 17588538 ~ 17589461 (-) True AMCG00021447
AMCG00021444 mRNA downstream 466593 17581327 ~ 17585399 (-) False AMCG00021444
AMCG00021445 mRNA downstream 512279 17518381 ~ 17539713 (-) True AMCG00021445
AMCG00021458 mRNA upstream 39726 18097892 ~ 18109169 (-) True AMCG00021458
AMCG00021457 mRNA upstream 51452 18109618 ~ 18148550 (-) True AMCG00021457
AMCG00021456 mRNA upstream 94839 18153005 ~ 18165667 (-) True AMCG00021456
AMCG00021459 mRNA upstream 137971 18196137 ~ 18226215 (-) True AMCG00021459
AMCG00021461 mRNA upstream 174405 18232571 ~ 18240579 (-) True AMCG00021461
TU107397 other downstream 125284 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 499226 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 499728 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 628574 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 748522 17298880 ~ 17303470 (-) False AMCG00021435
TU107532 other upstream 189495 18247661 ~ 18248894 (-) True AMCG00021460
TU107653 other upstream 763367 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 1202779 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 1217188 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 1407894 19466060 ~ 19468733 (-) False AMCG00021495

Expression Profile