RNA id: AMCG00021455


Basic Information

Item Value
RNA id AMCG00021455
length 2250
RNA type mRNA
GC content 0.58
exon number 13
gene id AMCG00021455
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18177180 ~ 18188162 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttctctgtctctgggTGATTTACGCGTCTTCGTCACACATCGCTCGGTTATTGTTTTGCGCGGGTGTGCACACTTTGCAGCCGGTGGATGCGTGACCCGGTGACGTCTGTTCCGGCTGCGTTCATGCCGACGCCGACCATGGACAGTTTCGTTGCAGAGTCTGCGAAAAGTCTGCGCAGACTCTGCAAAGTATGCGTGTCGTGAAGGCGGCCAGTGTCTTCACGTCTAGTAATTGATTTTGAATACAGCCTATGAGCGTTTACGTGAAGAGGAAGTGATGTAAGCACTGTTTCCGGTGATGCCAAGTTTGAATGTTCTTTAAATTAAAGGATAGCGACGAAGAGAGATACAGCACCAGGGCAATACAAGCGCGAATTTCTCATAATAACGACAAGAATACGAATAAAAATAAGAGCAACGATAATAATCCATTGTGCGGACAGACACCACCCAGGACGAAGTTTAAAAGTGCAGTGAAGCTGAGGAGTACGTCCTGCCTGCGCCCGTGTATCCTGTACTGTGTTGGGTGTTGGCTTGCCAGCAGAGGGGCAGCGATGAATGTTGAGACTCGGGACCTGTTCCTGCGTGTGGCCGGGAAGCAGGGCTGGTTGGTGCCAGGAGGACTGGACTCTGCAGAGGAGGAGCTGCTCAGGAGCATCGGTGCGGGAGGCTGCACGCCGCTGAGGGTGATGGGCTCCAATGGGGAGGAGGGTGACCCTAGCACCCCCAAGGCAGAGTGCCACCCCACCCAGCTGCTGCTGTCAGACAGTGAGTGGGAAGGCTCCTCGGGGAAGGAGAACTGCAAGGCGGTATGCTGGCAGAACCGAACCCAGCTAGACTCCAGCGATGATGACTTCGACCAGTTCTTGATAGAGAAGGCCACGCCCAGGACTATACCCCAACGGGAGCGTCGTCGCCCACTGAACACACATAGTCCCAGAGTCCAGGTGCTGAGCTCTGACAGTGACAGCTTCGAGGACTTCCTGAGCCGTGTGCGGACACCGAAGTCAAAGCCTCATGTGTCACTAGGGAACAGCAGCGATGACAGCCTGAGGCACTTCATTGTGAATAGCTGCTCCTCTGATGAAGACTTTGCCCCTGACAGGAGGAAGAAGCAGTTAACCTCTGCCAAAGATCTCTGCCGTCCCCCCCTCAGCCAGCCTGCGGTCCGCCGCCCCCCCTCCCAATGGGAGTCTCCAGTCTTCATCAGCAacagcgaggaggaggaggagggtagtgttgggggtgggggtttggTAATGAGGAGTACCTGGGTGTCTCAGAAAAGGGGCAACTCCGCAGGGCAGATAGGTAGGCCCATGAAAGATGCTCAGCCCCGGAAGGCAGCGAGCGAGAGAAGGCCGCGCCAAGCCCCCAACCCAGGATGCCACCCAGCCTCGGGCAGCTCTAGTGAGGAGGAGTTTGAGTCACTGCTGGACCGGATCAGGAAAAACCACAGCCTAGGCACCAGCGTCTCCCACACCCCCCTCACCTCTGCAGAGCCAAGGAGCTCGCTGTCCAAGCCCAGTGTCCTGCCAGAGCAGGTGCCGAGAGGTCGTCACAGGGTGCAGCCGAAGGTGACCCCTGGTCAGACAGCGGTCAGTCGGCCGTCAGGAAGCCACACCAAGCCCCGGCCTCCCAACAGTAGCAGAGTGGCGGTGTGCCAGACTCCTGGCTGTTTCCTGCAGGCACTGTCTGACCTCACCTCTCACTATGCCAAGAACTTCAAGCAGCATCGGGAGGAGCTGAGCAGCAAGCTGTACCAGCTCTATAACAGCACAGTGTTTGACAGCAAGtTGCCCAGCTCCATGTCACTCTCCTGGAACAAGAAGATGCGCAAGACGGCGGGGTACTGCGTGTCAGGGATGGAGCGTGGTCCGGGGGGACAGCGCTATGCACGCATCGAGCTTTCTGAGAAAGTGTGCGACTCAGCAGAGCGGCTGAGGGACACGCTAGTCCATGAGATGTGTCATGCAGCCACCTGGCTGGTGCATGGGGTGCGCGACGGGCATGGACGCTTCTGGCAGCTGTTTGCCCGCAAGGCTGTGCTGGCACACCCTGAGCTGCCCGTGCTGGTGCTGGTAACGCCGTCGCGCACGCGAGGCCCCACCCCCTTCGCCACATTTGTGAAGGAGCACTACAGCACCACACGGCAGGAGCTGGGGCAGAAAGGGTCACAGGCTCACGCAGAGGTCATGCGCAAACTCAGTGCAGACTTTGCTGCCCAGACACGCCTGACTGAGTCCTGA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107381 lncRNA upstream 528649 17648274 ~ 17648531 (+) True G86034
TU107364 lncRNA upstream 560727 17614614 ~ 17616453 (+) True G86020
TU107359 lncRNA upstream 591708 17581307 ~ 17585472 (+) False G86018
TU107362 lncRNA upstream 592467 17581307 ~ 17584713 (+) True G86018
TU107347 lncRNA upstream 644360 17532619 ~ 17532820 (+) True G86007
TU107502 lncRNA downstream 34673 18222835 ~ 18226242 (+) True G86117
TU107503 lncRNA downstream 41303 18229465 ~ 18229666 (+) True G86118
TU107605 lncRNA downstream 361266 18549428 ~ 18549759 (+) True G86202
TU107625 lncRNA downstream 427008 18615170 ~ 18618556 (+) True G86217
TU107639 lncRNA downstream 475031 18663193 ~ 18664533 (+) True G86227
AMCG00021454 mRNA upstream 6636 18167847 ~ 18170544 (+) True AMCG00021454
AMCG00021453 mRNA upstream 64959 18109078 ~ 18112221 (+) True AMCG00021453
AMCG00021450 mRNA upstream 109406 18061621 ~ 18067774 (+) True AMCG00021450
AMCG00021451 mRNA upstream 126776 18033191 ~ 18050404 (+) True AMCG00021451
AMCG00021440 mRNA upstream 670050 17494793 ~ 17507130 (+) True AMCG00021440
AMCG00021463 mRNA downstream 149894 18338056 ~ 18387523 (+) True AMCG00021463
AMCG00021465 mRNA downstream 300741 18488903 ~ 18540148 (+) True AMCG00021465
AMCG00021466 mRNA downstream 367630 18555792 ~ 18556400 (+) True AMCG00021466
AMCG00021473 mRNA downstream 843129 19031291 ~ 19045850 (+) True AMCG00021473
AMCG00021472 mRNA downstream 859009 19047171 ~ 19055099 (+) True AMCG00021472
TU107177 other upstream 1173049 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 1463142 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 1515298 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 1584207 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 2103562 16063600 ~ 16073618 (+) False AMCG00021373
TU107506 other downstream 60328 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 1091603 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 1311638 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 2154448 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 2190261 20378423 ~ 20380424 (+) True G86616

Expression Profile