RNA id: AMCG00021456


Basic Information

Item Value
RNA id AMCG00021456
length 699
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00021456
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18153005 ~ 18165667 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGACACGCAACAGACCGCGCGGGTACAAAGTCAGCGTCTTTGATCTGCGCCAGGCGTACCAGCTGCCCGGGGTCACCTTCCACCTGGGCGACCTCTGTGACAAGAAGGCTCTGCTGCCAGCCCTGGAGGGCGTCAGTGTGGTGTTCCACTGCGCCTCGCCCCCCCCCGCCTGTGACGACCGTGCTCTCTTCCATCGCGTCAACGTGAAAGGCACCAGCACCATGCTGGACGCCTGCAGGGAGGCAGGGGTGCAGCTGGTCCCCATCCTGGTGGACTCAGCCCGGAGAGGGAAGATGAAATTCATCATCGGTGATGGGACAAACCTGGTTGACTTCACCTTTGTGGAGAACGCATACCACATCACCAACGATGAGCCGGTGCTATTCTGGGAGTTCCTGTCGCAGGTGCTGCACGGGCTGGGATACGAGGTGCCCCGATATCGGCTGCCCTACAGTCTGGTGTACGGGCTGGCGCTGCTGCTCTGGCTGCTTACCCTGCTCCTGCGCCCCCTGCTTGACCTGCGACCCACCTTCACCCCCATGCGTGTGGCGCTGGCGGGCACTCACCACTACTACAGCTGTGCCCGTGCCAAGAGGGACCTGGGATACAAACCCCTGGTCAGCCTGGAGGAGGGCATCGCCAGGACCGTGCAAAGCTACCCAGAGCTGCACAAGGAAGCTGCTGCACACCACTGA

Function

GO:

id name namespace
GO:0001878 response to yeast biological_process

KEGG:

id description
K07748 NSDHL, ERG26; sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107375 lncRNA downstream 519019 17633755 ~ 17633986 (-) True G86029
TU107370 lncRNA downstream 567564 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA downstream 567564 17581242 ~ 17585441 (-) False AMCG00021444
TU107354 lncRNA downstream 620176 17532608 ~ 17532829 (-) True G86013
TU107353 lncRNA downstream 625866 17526753 ~ 17527139 (-) True G86012
TU107551 lncRNA upstream 157824 18323491 ~ 18324025 (-) True G86154
TU107606 lncRNA upstream 383777 18549444 ~ 18549757 (-) True G86203
TU107634 lncRNA upstream 426973 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 456896 18622563 ~ 18623590 (-) True G86225
TU107652 lncRNA upstream 493631 18659298 ~ 18663129 (-) True G86240
AMCG00021457 mRNA downstream 4455 18109618 ~ 18148550 (-) True AMCG00021457
AMCG00021458 mRNA downstream 43836 18097892 ~ 18109169 (-) True AMCG00021458
AMCG00021452 mRNA downstream 94839 18051992 ~ 18058166 (-) True AMCG00021452
AMCG00021449 mRNA downstream 469897 17638400 ~ 17683108 (-) True AMCG00021449
AMCG00021448 mRNA downstream 520700 17616305 ~ 17632305 (-) True AMCG00021448
AMCG00021459 mRNA upstream 30470 18196137 ~ 18226215 (-) True AMCG00021459
AMCG00021461 mRNA upstream 66904 18232571 ~ 18240579 (-) True AMCG00021461
AMCG00021460 mRNA upstream 75570 18241237 ~ 18248842 (-) False AMCG00021460
AMCG00021462 mRNA upstream 83351 18249018 ~ 18279785 (-) True AMCG00021462
AMCG00021464 mRNA upstream 311405 18477072 ~ 18477944 (-) True AMCG00021464
TU107397 other downstream 226297 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 600239 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 600741 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 729587 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 849535 17298880 ~ 17303470 (-) False AMCG00021435
TU107532 other upstream 81994 18247661 ~ 18248894 (-) True AMCG00021460
TU107653 other upstream 655866 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 1095278 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 1109687 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 1300393 19466060 ~ 19468733 (-) False AMCG00021495

Expression Profile