RNA id: AMCG00021457


Basic Information

Item Value
RNA id AMCG00021457
length 3000
RNA type mRNA
GC content 0.57
exon number 23
gene id AMCG00021457
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18109618 ~ 18148550 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACAATCACCCAGAGCCAGCAGGGGGAGGAGATGAACTGGTCTGACAGGGGCGTGTTCACAAAGACTGACCAGAAGACTACAATCTCCTCCACCTCCAACGGACACAGCACCAGGGTGGAGATCAGTGATGAGGAAGAAGCATCTTCTCCTGTGGACAGCAAACAGATTGTCCCCCCTGCCCCCATCCCCAATTCCACCCCCCCCACAGTCCTTGCCCCTGCACGCACCTGTGTTGAACCAAAGCCCCCCCAGGACAATACACTGACCACACTGTCCGACAGCATGCTCCCCTCTTTTACGCCCAGAAAGGACAGAGCCAGCATCCACCACACTGACACCTACCAAGATCAAGACAGATCCAGCATCCACCACACTGACCCCAACCCAGACCAAGACAGAGACGACAGCGTCCACCACACTAATCCCAGCCAAGACCAAGACAGAGCCAGCATCCACCACACTGACCCCAACCCAAACCAAGACAGAGCCAGTGTCCACCACACTGACCCCCACCAAGACCAAGACAGAGCCAGCATCCACCACACTGACCCCAGCCAAACCAACGTCCACCACACTGACTTTGACCCAGACAAAGACAGAGCCAGCATCCACTACATTGACTCCGACCCAAACCAAGACAGAGCCAGTGTCCACCACACTGACCCCAACCCAGACCAAGACAGAACCAGTGTCCACCACACTGACCCCAACCCAGACCAAGACAGAGCCAGTGTCCACCACACTGACCCCAGCCGAACCAACCACACTGACTCCGACCCAGACAAAGACAGAGCCAGCATCCACCACACTGACCCCCACCAAGACCAAGACAGAGCCAGTGTCCACCACACTGACCCCAACCCAGACAAAGACAGAGCCAACGTCCACCATACTGACTCCAAACCAGACCAAGACAGAACCAGCATCCACCACACTGACCCCAGCCAAGTCAACGTCCAGCACACTGACTCCGACCCAGACAAAGACAGAACCAGCATCCACCACACTGTACCCCTCCCAGACCAAGACAGAACCAGTGTCCACCACACTGACCCCAACCCAGACCAAGACAGAGCCAGTGTCCACCACACTGACCCCAACCCAGACAAAGACAGAGCCAATGTCCACCACACTGACTCCGACCCAGACCAAGACAGAACCAGTGTCCACCACACTGACCCCGACCCAGACCAAGACAGAGCCAGTGTCCACCACACTGACCCCAACCCAGACCAAGACAGAACCAGTGTCCACCACACTGACCCCGACCCAGACAAAGACAGAGCCAATGTCCACCACACTGACCCCAACCCAGACCAAGACAGAGCCAGTGTCCACCACACTGACCCCGACCCAGACCAAGACAGAGCCAGTGTTCACCACACTGACCCCAGCCAAACCAACGTCCACCACACTGACTCCGACCCAGACGAAGACAGACCCAGCATCTACTACATTGACTCCGACCAAAACCAAGACAGAGCCAGTGTCCACCACAATGACCCCAGCCAAGTCAACATCCAGCACACTGACTACGACCCAGACAAAGACAGAACCAGCATCCACCACACTGACCCTGACCAAGACAAAGACAGAGCCAGTGTCCACTACACTGACCCCAACCCAGACCAAGACAGAGCCAGTGTCCACCACACTGACCCCGACCCAGAAAAAGACAGAGCCAGTACCAAGACAGAGCCAGTGTCCACCACACTGACCCCAACCCAGACCAAGACAGAGCCAGCATCCACCACTCTGATTCCTGTTTCAACCACCTTCATGAAGAAAAGctTACTGGATCCCTTTGACCTGCCTGACCCATTTGACCCATATACAGTACAATCCAGGTCCACACCCAAGAAAAGctcACAAGTCCTGACAGACCAGAACCTCTCCAGCCCCCAGAATGTCATGACCACCACCAAGACCAGagAGGACTCCCCAGCCACCAATACGCAGCTGTTGAATGAAGACCTGTTCTCTCTGACAGACAGGAAGAAGGACACAAGTGCAGACAATGATCCAACCAGAAAGTCATCCTGGAGGAACCAGCACACCTCCCTCATAGACAGctctgcAGAAGCCCAGTCGCCATGGGACAGGTGGGGGACCCCTGGGGAACCTGTCACCACTATCACTGAGACCAGGAAGGAAGAGTTCAGTTTTGACCCTGAGCCAACCAGAAAGTCATCCTGGAGAGACCAGCACACCTCCCTCACTGACAGaaCGTCAGAGGATGACTCCCCATGGGACAGGTGGACATCTCCCACCATCTCCAGGATGACCAGTGACAGATGGGAGAGTCCAGAAGGGATAACCACCATCACAGAGACCAGAGGGCGAGAGAGACACAGTGCACCCCAGAGCTACATGGAGAACACAACACCACTCAGCAGctttaGCCAGTACtccaggaccatggacagcttGAAGCAACCTGAATCTCTGGACTCGGACTCCAAGAAGAGCATTGTGTACGTGAAGGAGTATGTCAACACCAGAGCGATGTCCACATCAGGATTTGGAGACTATGGAAGAAACTTCTCTGATGACATCACCTCAAGCTCTGCCACCTACTCCTACAGCAGCCCTTCATCTGGATACCGCAGTTCGtggagggggggcaggggcaCGGACACGGGCATCGAGGGGGCGGCGGTTCTCCTGGTCGCACACAAAGCACTCGAAGCCATTGAGGTAGTTGGGCTTGCTCATGTCGCCCACTCCCCACTCACGCCGCTGCAGAGCATCCTGCAGCAGGGCATTGGCCAGGCCACCAGAAAGTTAGCCAGGGCTTGCGGCGAGGGGAAGTCATCCACCAGCACAGCAGAATGGGCGTTTGGCAGCCAGTCGGACACTGAGGCGGTCACGGTCGGAGGGCACATCACAGTGGGACTGCATGTACAGTACAGGCGCCAGCCCTGCCCTCCGCCATCGGTTCTTGACGTCCAGGGAGACAGCAGGGGGGTGCAGCAGGTACTCCAGCGAGGGTAG

Function

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046920 alpha-(1->3)-fucosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107375 lncRNA downstream 475632 17633755 ~ 17633986 (-) True G86029
TU107370 lncRNA downstream 524177 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA downstream 524177 17581242 ~ 17585441 (-) False AMCG00021444
TU107354 lncRNA downstream 576789 17532608 ~ 17532829 (-) True G86013
TU107353 lncRNA downstream 582479 17526753 ~ 17527139 (-) True G86012
TU107551 lncRNA upstream 174941 18323491 ~ 18324025 (-) True G86154
TU107606 lncRNA upstream 400894 18549444 ~ 18549757 (-) True G86203
TU107634 lncRNA upstream 444090 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 474013 18622563 ~ 18623590 (-) True G86225
TU107652 lncRNA upstream 510748 18659298 ~ 18663129 (-) True G86240
AMCG00021458 mRNA downstream 449 18097892 ~ 18109169 (-) True AMCG00021458
AMCG00021452 mRNA downstream 51452 18051992 ~ 18058166 (-) True AMCG00021452
AMCG00021449 mRNA downstream 426510 17638400 ~ 17683108 (-) True AMCG00021449
AMCG00021448 mRNA downstream 477313 17616305 ~ 17632305 (-) True AMCG00021448
AMCG00021447 mRNA downstream 520157 17588538 ~ 17589461 (-) True AMCG00021447
AMCG00021456 mRNA upstream 4455 18153005 ~ 18165667 (-) True AMCG00021456
AMCG00021459 mRNA upstream 47587 18196137 ~ 18226215 (-) True AMCG00021459
AMCG00021461 mRNA upstream 84021 18232571 ~ 18240579 (-) True AMCG00021461
AMCG00021460 mRNA upstream 92687 18241237 ~ 18248842 (-) False AMCG00021460
AMCG00021462 mRNA upstream 100468 18249018 ~ 18279785 (-) True AMCG00021462
TU107397 other downstream 182910 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 556852 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 557354 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 686200 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 806148 17298880 ~ 17303470 (-) False AMCG00021435
TU107532 other upstream 99111 18247661 ~ 18248894 (-) True AMCG00021460
TU107653 other upstream 672983 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 1112395 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 1126804 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 1317510 19466060 ~ 19468733 (-) False AMCG00021495

Expression Profile