RNA id: AMCG00021459


Basic Information

Item Value
RNA id AMCG00021459
length 3456
RNA type mRNA
GC content 0.55
exon number 22
gene id AMCG00021459
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18196137 ~ 18226215 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCATTTCAGGATAGCCTAGGCGCTTTTTTGTCGATTCGAGTGATGCATATGTAAAGTTTATCGAAATAGACGAGGGAAGAGCGAGTTTTCCATATCAACagagaataaaaaacagcaaacaggCAAAGCGGTGTACTTCGTTTAATTGGGAAATCTAGACAACGCGTTGTGTTGGTTAAAGAGTGTGTAGTAACTATTCAAGACCGTAGCACAAAGCAGGACTGACATCGCCGTCCTGTTtctgtattcataataatagATTATCAGTTCCAATTACGGCTGCAtacgttgttttttttgtttttgtttttttttaattattaaaaaaccaTTACTCGATTTCTCTgagtataaattatatttttttaacatttatttcgTGCTAAAGTTACAAACGTGGATATGGCGAGTTCCGTTGGAAACGTGGCTGACAGTACAGAACCGACAAAACGTATGCTTTCCTTCCAAGGGTTGGCAGAGCTGGCTCACCGAGAGTACCAGTCTGGAGACTTCGAGGCGGCCGAGCGCCATTGCATGCAGCTGTGGCGGCAGGAGCCGGACAACACTggggtgctgctgctgctctcctcCATTCACTTCCAGTGCCGCCGACTGGACAGGTCGGCTCACTTTAGCACCCTGGCCATCAAGCAGAACCCCATGCTGGCTGAGGCCTACTCCAACCTGGGTAACGTGTACAAGGAACGTGGGCAGCTGCAGGAGGCCATTGAGCACTACCGCCATGCCCTGCGGCTCAAGCCCGACTTCATCGATGGCTACATCAACCTGGCTGCCGCGCTGGTGGCAGCTGGAGACATGGAGGGTGCCGTGCAGGCCTATGTGTCTGCCCTGCAGTACAACCCGGATCTATATTGTGTGCGCAGTGACCTGGGGAACCTTCTCAAAGCTCTCGGGCGTCTGGAAGAGGCCAAGGCCTGTTACCTGAAAGCCATCGAGACGCAACCCAACTTTGCAGTGGCTTGGAGTAACCTGGGTTGTGTGTTCAATGCCCAGGGGGAGATCTGGCTGGCTATTCACCACTTTGAGAAGGCTGTGACTCTGGATCCTAATTTTCTGGATGCCTACATTAACCTGGGCAACGTCCTGAAGGAGGCTCGCATCTTTGACAGGGCTGTGGCAGCCTACTTGCGAGCCCTGAGCCTGAGTCCGAACCACGCAGTCGTCCATGGCAACCTGGCCTGCGTGTACTACGAGCAGGGCCTGATTGACCTGGCCATCGACACGTACCGCCGTGCCATCGAGCTGCAGCCCCACTTCCCTGATGCCTACTGCAATCTAGCCAACGCCCTGAAGGAGAAGGGCAATgtgtCAGAGGCAGAGGAGTGCTACAACACGGCGCTCCGGCTGTGCCCCACGCACGCCGACTCGCTCAACAACCTGGCCAACATCAAGAGGGAGCAGGGCAACATCGAGGAGGCTGTACAGCTGTACCGGAAGGCCCTGGAGGTGTTCCCGGAGTTTGCAGCGGCTCACTCAAACTTGGCCAGCGTGTTGCAGCAACAGGGCAAACTGCAGGAGGCGCTTATGCACTACAAGGAGGCCATAAGGATCAGCCCCACGTTTGCAGATGCCTACTCCAACATGGGCAACACATTGAAGGAGATGCAGGACGTGCAGGGGGCGCTGCAGTGCTACACACGTGCCATCCAGATCAACCCTGCCTTTGCCGATGCGCATAGCAACCTGGCCTCCATCCACAAGGACTCGGGCAACATACCAGAAGCGATTGCATCTTATCGCACGGCCCTGAAGCTGAAGCCGGACTTCCCCGATGCCTACTGCAACTTGGCTCATTGCCTGCAGATTGTGTGCGACTGGACAGACTATGATGAGCGCATGAAGAAGCTGGTGAGCATCGTGGCTGACCAGCTGGACAAGAACCGGCTGCCCTCGATCAACGTCCTGCACAAGCCACCTTATGAGCACCCCAAGGACCTGAAGGCCAGTGGGGGGCGCCTGCGCATTGGCTACGTCAGCTCAGACTTTGGGAACCATCCCACCTCACACCTTATGCAGTCCATCCCTGGCATGCACAACTCAGAGAGGTTTGAGGTGTTCTGCTATGCACTCAGCCCTGACGACGGCACTAACTTCCGAGTGAAGGTGATGGCTGAGGCTAACCACTTCACAGACCTGTCCCAGATCCCTTGCAATGGAAAGGCTGCCGACCGGATCCACCAGGATGGTGTCCACATCCTGGTCAACATGAATGGCTACACCAAGGGGGCACGCAACGAGCTGTTTGCCCTGCGGGCTGCACCTATCCAGGCGATGTGGTTGGGTTACCCTGGCACCAGTGGGGCACCCTTCATGGATTACATCATCTCTGACAAGGAGACTTCCCCACTGGATGTGGCGGAGCAGTACTCGGAGAAGCTGGCTTACATGCCCAACACCTTCTTTATTGGAGACCACGCTAACATGTTCCCCCACCTCAAGAAGAAGGCAGTGATCGACTTCAAGTCCAACGGGCACATCTTTGACAATCGCATCGTGCTGAACGGCATCGACCTTAAGGCTTTTCTGGACAGCCTGCCTGACGTCAAGGTGGTGAAGCTGAAGTGTGATGGGCAGGAGAACTCAGACAGTAACTCAGCCCTGTCAATGCCCGTCATCCCCATGAACACAGCAGCTGAGGCCATCATCAACATGATCAACCAGGGCCAGATCCAGGTCACCATCAACGGCTTCACTGTGAGCAATGGGCTGGCCACCACACAGATCAATAACAAGGCAGCAACAGGGGAGGAGGTACCGCGAACCATCATTGTGACGACGCGCTCACAATACGGACTCCCTGAGGACGCCATCGTCTACTGCAACTTCAACCAGCTCTACAAGATCGACCCCCCCACGCTGCAGATGTGGGCCAATATCCTGAAGCGTGTGCCCAACAGTGTGCTGTGGCTGCTGCGGTTCCCAGCAGTGGGTGAGCCCAACATCCAGCAGTACGCTCAGAGCATGGGCCTACCTGCCAGCCGCATTGTGTTCTCACCCGTGGCGCCCAAGGAGGAGCATGTGCGCCGTGGGCAGCTGGCTGATGTATGCCTGGACACACCTCTCTGCAACGGCCACACCACTGGCATGGACGTTCTCTGGGCCGGTACCCCCATGGTCACGATGCCAGGCGAGACTCTGGCATCGCGAGTGGCCGCCTCCCAGCTCACCTGCCTGGGTTGCACTGAGCTGATAGCCATGAACCGTCAGGACTATGAGGATGTGGCTGTCAAGCTGGGCACTGACATGGAATTCCTGAAGAAAATCCGAGCGAAAGTGTGGAAGCAGCGCATCTGCAGTCCACTGTTCAACACCAAGCAGTACACCATGGACCTGGAGAAGCTGTACCTGCAGATGTGGGAGCACTACGCCACGGGGGGCAAGCCTGAGCACCTGTTCAAACTGCAGGCCCTGGAGAGCAGCGAGACCGCCTGA

Function

GO:

id name namespace
GO:0006493 protein O-linked glycosylation biological_process
GO:0016262 protein N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K09667 OGT; protein O-GlcNAc transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107375 lncRNA downstream 562151 17633755 ~ 17633986 (-) True G86029
TU107370 lncRNA downstream 610696 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA downstream 610696 17581242 ~ 17585441 (-) False AMCG00021444
TU107354 lncRNA downstream 663308 17532608 ~ 17532829 (-) True G86013
TU107353 lncRNA downstream 668998 17526753 ~ 17527139 (-) True G86012
TU107551 lncRNA upstream 97276 18323491 ~ 18324025 (-) True G86154
TU107606 lncRNA upstream 323229 18549444 ~ 18549757 (-) True G86203
TU107634 lncRNA upstream 366425 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 396348 18622563 ~ 18623590 (-) True G86225
TU107652 lncRNA upstream 433083 18659298 ~ 18663129 (-) True G86240
AMCG00021456 mRNA downstream 30470 18153005 ~ 18165667 (-) True AMCG00021456
AMCG00021457 mRNA downstream 47587 18109618 ~ 18148550 (-) True AMCG00021457
AMCG00021458 mRNA downstream 86968 18097892 ~ 18109169 (-) True AMCG00021458
AMCG00021452 mRNA downstream 137971 18051992 ~ 18058166 (-) True AMCG00021452
AMCG00021449 mRNA downstream 513029 17638400 ~ 17683108 (-) True AMCG00021449
AMCG00021461 mRNA upstream 6356 18232571 ~ 18240579 (-) True AMCG00021461
AMCG00021460 mRNA upstream 15022 18241237 ~ 18248842 (-) False AMCG00021460
AMCG00021462 mRNA upstream 22803 18249018 ~ 18279785 (-) True AMCG00021462
AMCG00021464 mRNA upstream 250857 18477072 ~ 18477944 (-) True AMCG00021464
AMCG00021468 mRNA upstream 339889 18566104 ~ 18575434 (-) True AMCG00021468
TU107397 other downstream 269429 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 643371 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 643873 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 772719 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 892667 17298880 ~ 17303470 (-) False AMCG00021435
TU107532 other upstream 21446 18247661 ~ 18248894 (-) True AMCG00021460
TU107653 other upstream 595318 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 1034730 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 1049139 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 1239845 19466060 ~ 19468733 (-) False AMCG00021495

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015214 False 3189 mRNA 0.50 23 NC_007125.7 14725355 ~ 14745660 (-)
grasscarp (Ctenopharyngodon idella) CI01000000_18815522_18834911.mRNA True 3882 mRNA 0.51 28 CI01000000 18815473 ~ 18834911 (-)