RNA id: TU107532


Basic Information

Item Value
RNA id TU107532
length 1234
RNA type TUCP
GC content 0.53
exon number 1
gene id AMCG00021460
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18241237 ~ 18248894 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGACAGTGTCTGCCCTCAGAAACGTCAGTCCCCAGTGCACAGAGGCAGTGATGCAGATGGAGACCCTGGGTGGCCAGTTGACCCATCAAATCTGGAGCACTCTCACCTTCTGGCCTGTGGGGCTCCTGTATGAGCTAGGTCTGAGCAAGCAAGGGGGTGCAGTGCACTCTCACCTCCCTGCAGGAACCCAGCAGCGCAGTCTGTCCAACACAGTGTATTGCCAACACTGTCTCAACagctgtctgtccgtctgtctgtccatccatcTGCCTGCTTGTCCTCCTGGGAACGGAGGCAGCGGCTGTGTGCAGCAGCTGTGTCTGCTGGGAGAGAGTTGGTGTTATGAGGGACTGCTGGTAGGGGGGTGGCTGGGCTGATGTTAGAGCTTCTACAAGGAATCCAGAGAGTCAGCAGCTTCAGCATTATGTCCCCcctacaccccccacccctcattACCCCCCAGTCATGTCTCGCTACTGTGTGCCAGCCAGTGTGATTAGCTTTACAGCACCTACACTTACTACCTCCAGCCATTTACTAACTCTGCATCCTCAAACCACCCTCACCTCCCCCTGTTTTCTCAAACATGCACCTTAGCCCCCCTGCAATACTGGTTCCCTCTTCCGGGGTTGTGAGGTTTGGGTGAAGGACAACCACAACCTACTGGCAGGAAGTGGGATTGAGATCCTAATAgtgctactccacactgccccCTACAGTATGCGCTGAAGGAGTTCCAGACTCCCAGGCTGTGTGCTACTGCTCTGTTAGTCCTGCATGTTGTCAGACAGTGAGGCACAGTTGTGGTAGTGCTGTCCACTCCAACCCCTCCTCTGTGTCTTTGTGCACAGAAACAAGAGCAAAGAGGGCTGCCTCCCCACTGAAAAcgcacgcacatacacacacacaacctgtccccctcctcccttctcATGTTGCAGCTGCTAAGTGCTGATTGGTTGCTGTGTGAGTGGCAGTACAGGGCTCTGACAGACACCTTTGCACTGGGGTTCACATAAAGTATGGAGCGATCATTCGAACTCTAAAGCGACAGACCCATCATCTTTGCTGTGTGGAGAGCTGTGCTATTTCATCATGAACTGGAGGacaagagaaagagagcaacattatatgtgtatgtgattggagtaaagacacacaaacacaaagtaatGTTTCCAATCTGTAGAAATGGACACTGCATTGGGGACTGTCCACAAGGGCTGTAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107375 lncRNA downstream 613675 17633755 ~ 17633986 (-) True G86029
TU107370 lncRNA downstream 662220 17581242 ~ 17585441 (-) True AMCG00021444
TU107371 lncRNA downstream 662220 17581242 ~ 17585441 (-) False AMCG00021444
TU107354 lncRNA downstream 714832 17532608 ~ 17532829 (-) True G86013
TU107353 lncRNA downstream 720522 17526753 ~ 17527139 (-) True G86012
TU107551 lncRNA upstream 74597 18323491 ~ 18324025 (-) True G86154
TU107606 lncRNA upstream 300550 18549444 ~ 18549757 (-) True G86203
TU107634 lncRNA upstream 343746 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA upstream 373669 18622563 ~ 18623590 (-) True G86225
TU107652 lncRNA upstream 410404 18659298 ~ 18663129 (-) True G86240
AMCG00021461 mRNA downstream 7082 18232571 ~ 18240579 (-) True AMCG00021461
AMCG00021459 mRNA downstream 21446 18196137 ~ 18226215 (-) True AMCG00021459
AMCG00021456 mRNA downstream 81994 18153005 ~ 18165667 (-) True AMCG00021456
AMCG00021457 mRNA downstream 99111 18109618 ~ 18148550 (-) True AMCG00021457
AMCG00021458 mRNA downstream 138492 18097892 ~ 18109169 (-) True AMCG00021458
AMCG00021462 mRNA upstream 124 18249018 ~ 18279785 (-) True AMCG00021462
AMCG00021464 mRNA upstream 228178 18477072 ~ 18477944 (-) True AMCG00021464
AMCG00021468 mRNA upstream 317210 18566104 ~ 18575434 (-) True AMCG00021468
AMCG00021469 mRNA upstream 346248 18595142 ~ 18608153 (-) True AMCG00021469
AMCG00021467 mRNA upstream 414329 18663223 ~ 18684421 (-) True AMCG00021467
TU107397 other downstream 320953 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 694895 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 695397 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 824243 17419604 ~ 17423418 (-) True G85953
TU107277 other downstream 944191 17298880 ~ 17303470 (-) False AMCG00021435
TU107653 other upstream 572639 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 1012051 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 1026460 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 1217166 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 2080528 20329422 ~ 20335304 (-) True G86600

Expression Profile