RNA id: AMCG00021466


Basic Information

Item Value
RNA id AMCG00021466
length 609
RNA type mRNA
GC content 0.63
exon number 1
gene id AMCG00021466
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18555792 ~ 18556400 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGGGAAGAGTCTCCTGCTGAAGGTGATCCTGCTGGGTGATGGTGGTGTGGGCAAGAGCTCGCTGATGAACCGCTATGTGACAGACCGCTTCGACTCGCAGTCCTTCCACACCATCGGCGTGGAGTTCCTGAACCGCGACCTGGAGGTGGACGGCCGCCTGGTCACCCTACAGATCTGGGACACGGCTGGGCAGGAGCGCTTCAAGAGCCTGCGCACACCCTTCTACCGGGGTGCGGACTGCTGCCTCCTCACCTTCGCACTGGACGACGCACAGAGCTTCCGCAACCTGGGCTGCTGGAAGAAGGAGTTTGTGTTTTACTCCGACGTGTGTGACCCTGAGCGCTTCCCCTTCGTGGTGCTGGGCAACAAGGTGGACCAGGAGGAGCGGCAGGTGGGAGTGGAGGAAGCTCGGGCCTGGTGCCAGGATAACGGTGGCTGCCCCTACTTCGAGACCAGCGCCAAGGATGACACCAATGTAGGCGAGGCATTCGAGGCGGCCGTGCGGCAGGTGCTGGCTGGGGAGGAGGCACTGGAGCACTCCCTGCTGGGCAGTGCCATCGACCTGCATGGCAACCGCAAAGCCAGCCGGTCATCCTGCTGCTGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07900 RAB9B; Ras-related protein Rab-9B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107605 lncRNA upstream 6033 18549428 ~ 18549759 (+) True G86202
TU107503 lncRNA upstream 326126 18229465 ~ 18229666 (+) True G86118
TU107502 lncRNA upstream 329550 18222835 ~ 18226242 (+) True G86117
TU107381 lncRNA upstream 907261 17648274 ~ 17648531 (+) True G86034
TU107364 lncRNA upstream 939339 17614614 ~ 17616453 (+) True G86020
TU107625 lncRNA downstream 58770 18615170 ~ 18618556 (+) True G86217
TU107639 lncRNA downstream 106793 18663193 ~ 18664533 (+) True G86227
TU107641 lncRNA downstream 122713 18679113 ~ 18679876 (+) True G86229
TU107691 lncRNA downstream 490649 19047049 ~ 19055103 (+) False AMCG00021472
TU107705 lncRNA downstream 596615 19153015 ~ 19153282 (+) True G86284
AMCG00021465 mRNA upstream 15644 18488903 ~ 18540148 (+) True AMCG00021465
AMCG00021463 mRNA upstream 168269 18338056 ~ 18387523 (+) True AMCG00021463
AMCG00021455 mRNA upstream 367630 18177180 ~ 18188162 (+) True AMCG00021455
AMCG00021454 mRNA upstream 385248 18167847 ~ 18170544 (+) True AMCG00021454
AMCG00021453 mRNA upstream 443571 18109078 ~ 18112221 (+) True AMCG00021453
AMCG00021473 mRNA downstream 474891 19031291 ~ 19045850 (+) True AMCG00021473
AMCG00021472 mRNA downstream 490771 19047171 ~ 19055099 (+) True AMCG00021472
AMCG00021475 mRNA downstream 551377 19107777 ~ 19119568 (+) True AMCG00021475
AMCG00021480 mRNA downstream 608278 19164678 ~ 19180521 (+) True AMCG00021480
AMCG00021478 mRNA downstream 646478 19202878 ~ 19220274 (+) True AMCG00021478
TU107506 other upstream 306106 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 1551661 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 1841754 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 1893910 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 1962819 16590181 ~ 16592973 (+) True G85764
TU107757 other downstream 723365 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 943400 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 1786210 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 1822023 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 1842526 20398926 ~ 20401249 (+) True G86601

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015196 False 873 mRNA 0.53 2 NC_007125.7 14603731 ~ 14607855 (-)