RNA id: AMCG00021467


Basic Information

Item Value
RNA id AMCG00021467
length 1704
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00021467
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18663223 ~ 18684421 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCTCTGGAGAAATCCATCACCTTCTCCTTCAGCTCCCCTGGGATGAGCAGATCAGAAGgtcTTTTCCATAGAGCGATCATTCAGAGTGGCTCTGCGTTGTCCAGTTGGGCTGTGAACTACCAGCCGGTGAAGTACACAAGGCTCCTGGCAGAGAAGGTGGGCTGCAATGTGCTGGACACACTGGACATGGTGGACTGCCTGCGCAAGAAGAGTGCCCGTGAGCTGGTGGAGCAAGACATCCAGCCAGCGCGTTACCACGTGGCATTCGGGCCGGTCATCGACGGCGACGTCATCCCAGATGATCCAGAGATCTTGATGGAGCAGGGCGAGTTCCTCAACTACGATATCATGCTGGGGGTCAACCAGGGCGAGGGCCTGCGCTTCGTGGAGAATGTGGTGGACTCTGAGGACGGCGTCTCTGGCAATGACTTTGACTTCTCTGTGTCAGACTTCGTGGACAGCCTTTACGGCTACCCTGAGGGCAAGGACACATTGCGTGAGACCATCAAGTTCATGTACACCGACTGGGCTGACCGTGAGAATCCTGAGACGCGCCGCAAGACGCTGGTGGCACTCTTCACTGACCACCAGTGGGTGGAGCCAGCAGTGGTGACGGCCGACCTGCATGCACGCTACGGCTCACCCACTTACTTCTATGCCTTCTACCACCACTGCCAGAGTCTGATGAAGCCGGCTTGGTCTGACGCTGCGCATGGAGATGAGGTGCCCTATGTGTTTGGCATCCCCATGATAGGCCCCACCGACCTCTTCCCCTGCAACTTCTCCAAGAACGATGTGATGCTCAGCGCTGTTGTCATGACCTACTGGACCAACTTCGCCAAGACTGGGGACCCCAATAAGCCAGTTCCCCAGGACACCAAGTTCATCCACACCAAGGCCAACCGCTTTGAGGAGGTGGCCTGGTCCAAATACAACCCGCAGGACCAACTCTACCTCCACATTGGGCTGAAGCCGCGCGTTCGTGACCACTACCGTGCCACCAAGGTGGCCTTCTGGAAGCACCTGGTGCCGCACCTATATAATCTGCATGACATGTTCCACTacacctccaccaccaccaagGTGCCCCCACCCGAGACCACGCAGAATTCCTTCGCAACCAAGCGGCCCAACGGCAAGAACTGGCCCTTCAACACCAAACGGCCGCCCATGTCCCCAGCCTACAACAATGAGAACAGCAAGGAGAAGTGGAATGGCGAGGAGGAGAGCGGGCCACTGCTGGTTGAGAACCCCCGCGATTATTCCACGGAGTTGAGCGTGACCATTGCGGTGGGTGCCTCGTTGTTGTTCCTCAACGTACTGGCCTTTGCTGCGCTATACTACCGCAAGGACAAGCGCCGGCAGGACTCACACCGGCAGCCCAGCCCCCAGCGCAGCGCCAATACCAACGACCTGGCCCACGCTCCCGAGGAGGAGATCATGTCCCTGCAGATGAACCAGACACACCACGAGTGCGAAAGTGTGCCCCCTCACGACCCCCTGCGCCTGGCCTCGCTTCCTgactacacactcacactgcgCCGCTCACCTGATGACATCCCGCTCATGACGCCCAATACCATCACCATGATCCCCAACTCGCTGGTGGGAATGCAAAACCTGCATCCATACAACACCTTCACTGCCGGCTTCAACAGTACAGGCCTGCCCCACTCACACTCCACCACGCGTGTATAG

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K07378 NLGN; neuroligin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107652 lncRNA downstream 94 18659298 ~ 18663129 (-) True G86240
TU107634 lncRNA downstream 31756 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA downstream 39633 18622563 ~ 18623590 (-) True G86225
TU107606 lncRNA downstream 113466 18549444 ~ 18549757 (-) True G86203
TU107551 lncRNA downstream 339198 18323491 ~ 18324025 (-) True G86154
TU107657 lncRNA upstream 66251 18750672 ~ 18811147 (-) True G86244
TU107662 lncRNA upstream 233833 18918254 ~ 18918531 (-) True G86249
TU107666 lncRNA upstream 321195 19005616 ~ 19006432 (-) True G86253
TU107706 lncRNA upstream 468584 19153005 ~ 19153285 (-) True G86285
TU107752 lncRNA upstream 574136 19258557 ~ 19258855 (-) True G86324
AMCG00021469 mRNA downstream 55070 18595142 ~ 18608153 (-) True AMCG00021469
AMCG00021468 mRNA downstream 87789 18566104 ~ 18575434 (-) True AMCG00021468
AMCG00021464 mRNA downstream 185279 18477072 ~ 18477944 (-) True AMCG00021464
AMCG00021462 mRNA downstream 383438 18249018 ~ 18279785 (-) True AMCG00021462
AMCG00021460 mRNA downstream 414381 18241237 ~ 18248842 (-) False AMCG00021460
AMCG00021471 mRNA upstream 78507 18762928 ~ 18772587 (-) True AMCG00021471
AMCG00021470 mRNA upstream 113497 18797918 ~ 18809251 (-) True AMCG00021470
AMCG00021474 mRNA upstream 308303 18992724 ~ 19026083 (-) True AMCG00021474
AMCG00021476 mRNA upstream 374463 19058884 ~ 19073801 (-) True AMCG00021476
AMCG00021477 mRNA upstream 391560 19075981 ~ 19100225 (-) True AMCG00021477
TU107532 other downstream 414329 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 736515 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 1110457 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 1110959 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 1239805 17419604 ~ 17423418 (-) True G85953
TU107653 other upstream 137112 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 576524 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 590933 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 781639 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 1645001 20329422 ~ 20335304 (-) True G86600

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00014192 True 2448 mRNA 0.50 5 NC_007125.7 14315078 ~ 14532861 (+)
grasscarp (Ctenopharyngodon idella) TU368946 True 3086 lncRNA 0.46 2 CI01000110 3872682 ~ 3897866 (+)